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singlecell/src/org/labkey/singlecell/run/NimbleAlignmentStep.java

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -116,8 +116,8 @@ private File createNimbleBam(AlignmentOutputImpl output, Readset rs, List<File>
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private File getCachedLoupeFile(Readset rs, boolean throwIfNotFound) throws PipelineJobException
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{
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Map<Integer, Integer> map = getPipelineCtx().getSequenceSupport().getCachedObject(CACHE_KEY, PipelineJob.createObjectMapper().getTypeFactory().constructParametricType(Map.class, Integer.class, Integer.class));
120-
Integer dataId = map.get(rs.getReadsetId());
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Map<Long, Long> map = getPipelineCtx().getSequenceSupport().getCachedObject(CACHE_KEY, PipelineJob.createObjectMapper().getTypeFactory().constructParametricType(Map.class, Long.class, Long.class));
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Long dataId = map.get(rs.getReadsetId());
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if (dataId == null)
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{
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if (throwIfNotFound)
@@ -199,7 +199,7 @@ public void init(SequenceAnalysisJobSupport support) throws PipelineJobException
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}
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// Try to find 10x barcodes:
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HashMap<Integer, Integer> readsetToLoupe = new HashMap<>();
202+
HashMap<Long, Long> readsetToLoupe = new HashMap<>();
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for (Readset rs : support.getCachedReadsets())
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{
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ExpData f = findLoupeFile(rs);

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