Panic on unpaired read

hextraza · hextraza · commit ea794201c9c8 · 2025-01-31T12:24:52.000-08:00
diff --git a/src/parse/sorted_bam_reader.rs b/src/parse/sorted_bam_reader.rs
@@ -41,7 +41,7 @@ impl SortedBamReader {
             };
 
             if !record.is_paired() {
-                continue;
+                panic!("Error: found unpaired read, cannot run nimble in paired-end mode. Exiting.");
             }
 
             match record.aux(b"CB") {

Original file line number	Diff line number	Diff line change
`@@ -41,7 +41,7 @@ impl SortedBamReader {`
`41`	`41`	`};`
`42`	`42`
`43`	`43`	`if !record.is_paired() {`
`44`		`- continue;`
	`44`	`+ panic!("Error: found unpaired read, cannot run nimble in paired-end mode. Exiting.");`
`45`	`45`	`}`
`46`	`46`
`47`	`47`	`match record.aux(b"CB") {`