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library(IRanges)
x1 <- IntegerList(15:11, 21:28, compress=TRUE)
order(x1)
# IntegerList of length 2
# [[1]] 5 4 3 2 1
# [[2]] 1 2 3 4 5 6 7 8
order(x1, decreasing=TRUE) # BROKEN!
# IntegerList of length 2
# [[1]] 13 12 11 10 9
# [[2]] 3 2 1 -4 -3 -2 -1 0
This in turn breaks sort( , decreasing=TRUE):
sort(x1, decreasing=TRUE)
# Error in seq_len(x_NROW)[i] :
# only 0's may be mixed with negative subscripts
Everything looks fine with a SimpleIntegerList object:
x2 <- IntegerList(15:11, 21:28, compress=FALSE)
order(x2)
# IntegerList of length 2
# [[1]] 5 4 3 2 1
# [[2]] 1 2 3 4 5 6 7 8
order(x2, decreasing=TRUE)
# IntegerList of length 2
# [[1]] 1 2 3 4 5
# [[2]] 8 7 6 5 4 3 2 1
sort(x2, decreasing=TRUE)
# IntegerList of length 2
# [[1]] 15 14 13 12 11
# [[2]] 28 27 26 25 24 23 22 21
sessionInfo():
> sessionInfo()
R version 3.6.0 Patched (2019-05-02 r76454)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Ubuntu 16.04.5 LTS
Matrix products: default
BLAS: /home/hpages/R/R-3.6.r76454/lib/libRblas.so
LAPACK: /home/hpages/R/R-3.6.r76454/lib/libRlapack.so
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=en_US.UTF-8 LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats4 parallel stats graphics grDevices utils datasets
[8] methods base
other attached packages:
[1] IRanges_2.19.16 S4Vectors_0.23.23 BiocGenerics_0.31.6
loaded via a namespace (and not attached):
[1] compiler_3.6.0
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