I used ONT DRS RNA004 data, I don't know how to run IsoAnnot #2
Description
I am using ONT DRS, RNA004 kit, I don't know how to run IsoAnnot and also SQANTI3 comes with this IsoAnnot;
And my senior brother gave me the simple GTF file, do I need to use this GTF as a reference input, or run it directly without gtf
./isoannot.sh --database mytranscripts --species jh1 --config fasta_cdna=/public/home/JH1transcripts.fa
the error is The snakefile or configfile requested do not exist. Please, make sure that you are using a supported species.
And my species is cotton, a non-model species, how to write config.yaml