Added metropolis hastings sampling for jax

[FlorianPfaff]

No description provided.

[github-actions]

❌MegaLinter analysis: Error

Descriptor	Linter	Files	Fixed	Errors	Warnings	Elapsed time
✅ ACTION	actionlint	5		0	0	0.13s
✅ COPYPASTE	jscpd	yes		no	no	5.16s
✅ JSON	prettier	2	0	0	0	0.64s
✅ JSON	v8r	2		0	0	3.6s
✅ MARKDOWN	markdownlint	1	0	0	0	0.72s
✅ MARKDOWN	markdown-table-formatter	1	0	0	0	0.29s
✅ PYTHON	bandit	244		0	0	3.21s
✅ PYTHON	black	244	11	0	0	5.12s
❌ PYTHON	flake8	244		8	0	1.63s
✅ PYTHON	isort	244	35	0	0	0.52s
✅ PYTHON	mypy	244		0	0	3.92s
❌ PYTHON	pylint	244		207	0	35.97s
✅ PYTHON	ruff	244	35	0	0	0.07s
✅ REPOSITORY	gitleaks	yes		no	no	3.05s
✅ REPOSITORY	git_diff	yes		no	no	0.02s
✅ REPOSITORY	secretlint	yes		no	no	4.95s
✅ REPOSITORY	syft	yes		no	no	1.49s
✅ REPOSITORY	trivy-sbom	yes		no	no	1.24s
✅ REPOSITORY	trufflehog	yes		no	no	11.78s
✅ YAML	prettier	9	1	0	0	0.72s
✅ YAML	v8r	9		0	0	7.02s
✅ YAML	yamllint	9		0	0	0.46s

Detailed Issues

❌ PYTHON / flake8 - 8 errors

pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:1: F811 redefinition of unused 'linalg' from line 9
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:1: F401 'pyrecest.backend.sqrt' imported but unused
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:1: F401 'pyrecest.backend.cos' imported but unused
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:1: F401 'pyrecest.backend.sin' imported but unused
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:1: F401 'pyrecest.backend.stack' imported but unused
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:8:1: F401 'pyrecest.backend.sqrt' imported but unused
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:8:1: F401 'pyrecest.backend.stack' imported but unused
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:8:1: F401 'pyrecest.backend.linalg' imported but unused

❌ PYTHON / pylint - 207 errors

************* Module pyrecest.distributions.abstract_ellipsoidal_ball_distribution
pyrecest/distributions/abstract_ellipsoidal_ball_distribution.py:3:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.distributions.abstract_grid_distribution
pyrecest/distributions/abstract_grid_distribution.py:5:0: E0401: Unable to import 'beartype' (import-error)
************* Module pyrecest.distributions.abstract_se2_distribution
pyrecest/distributions/abstract_se2_distribution.py:1:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
pyrecest/distributions/abstract_se2_distribution.py:132:8: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.distributions.abstract_se3_distribution
pyrecest/distributions/abstract_se3_distribution.py:5:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.distributions.cart_prod.abstract_hypercylindrical_distribution
pyrecest/distributions/cart_prod/abstract_hypercylindrical_distribution.py:4:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
pyrecest/distributions/cart_prod/abstract_hypercylindrical_distribution.py:6:0: E0401: Unable to import 'scipy.integrate' (import-error)
pyrecest/distributions/cart_prod/abstract_hypercylindrical_distribution.py:7:0: E0401: Unable to import 'scipy.optimize' (import-error)
pyrecest/distributions/cart_prod/abstract_hypercylindrical_distribution.py:8:0: E0401: Unable to import 'matplotlib' (import-error)
pyrecest/distributions/cart_prod/abstract_hypercylindrical_distribution.py:37:0: E0401: Unable to import 'scipy.integrate' (import-error)
************* Module pyrecest.distributions.cart_prod.cart_prod_stacked_distribution
pyrecest/distributions/cart_prod/cart_prod_stacked_distribution.py:2:0: E0401: Unable to import 'beartype' (import-error)
************* Module pyrecest.distributions.cart_prod.hypercylindrical_dirac_distribution
pyrecest/distributions/cart_prod/hypercylindrical_dirac_distribution.py:3:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.distributions.cart_prod.partially_wrapped_normal_distribution
pyrecest/distributions/cart_prod/partially_wrapped_normal_distribution.py:31:0: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.distributions.circle.abstract_circular_distribution
pyrecest/distributions/circle/abstract_circular_distribution.py:1:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.distributions.circle.circular_fourier_distribution
pyrecest/distributions/circle/circular_fourier_distribution.py:4:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.distributions.circle.sine_skewed_distributions
pyrecest/distributions/circle/sine_skewed_distributions.py:5:0: E0401: Unable to import 'scipy.special' (import-error)
pyrecest/distributions/circle/sine_skewed_distributions.py:6:0: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.distributions.circle.von_mises_distribution
pyrecest/distributions/circle/von_mises_distribution.py:18:0: E0401: Unable to import 'scipy.optimize' (import-error)
pyrecest/distributions/circle/von_mises_distribution.py:19:0: E0401: Unable to import 'scipy.special' (import-error)
pyrecest/distributions/circle/von_mises_distribution.py:20:0: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.distributions.circle.wrapped_normal_distribution
pyrecest/distributions/circle/wrapped_normal_distribution.py:25:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.abstract_hyperhemispherical_distribution
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:5:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:0: W0404: Reimport 'linalg' (imported line 9) (reimported)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:28:0: E0401: Unable to import 'scipy.optimize' (import-error)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:69:16: E0102: function already defined line 59 (function-redefined)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:76:16: E0102: function already defined line 59 (function-redefined)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:0: W0611: Unused sqrt imported from pyrecest.backend (unused-import)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:0: W0611: Unused cos imported from pyrecest.backend (unused-import)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:0: W0611: Unused sin imported from pyrecest.backend (unused-import)
pyrecest/distributions/hypersphere_subset/abstract_hyperhemispherical_distribution.py:9:0: W0611: Unused stack imported from pyrecest.backend (unused-import)
************* Module pyrecest.distributions.hypersphere_subset.abstract_hypersphere_subset_distribution
pyrecest/distributions/hypersphere_subset/abstract_hypersphere_subset_distribution.py:36:0: E0401: Unable to import 'scipy.integrate' (import-error)
pyrecest/distributions/hypersphere_subset/abstract_hypersphere_subset_distribution.py:37:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.abstract_hyperspherical_distribution
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:4:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:28:0: E0401: Unable to import 'scipy.optimize' (import-error)
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:81:16: E0102: function already defined line 57 (function-redefined)
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:86:16: E0102: function already defined line 57 (function-redefined)
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:8:0: W0611: Unused sqrt imported from pyrecest.backend (unused-import)
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:8:0: W0611: Unused stack imported from pyrecest.backend (unused-import)
pyrecest/distributions/hypersphere_subset/abstract_hyperspherical_distribution.py:8:0: W0611: Unused linalg imported from pyrecest.backend (unused-import)
************* Module pyrecest.distributions.hypersphere_subset.abstract_spherical_distribution
pyrecest/distributions/hypersphere_subset/abstract_spherical_distribution.py:1:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.abstract_spherical_harmonics_distribution
pyrecest/distributions/hypersphere_subset/abstract_spherical_harmonics_distribution.py:20:0: E0401: Unable to import 'scipy.linalg' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.bingham_distribution
pyrecest/distributions/hypersphere_subset/bingham_distribution.py:17:0: E0401: Unable to import 'scipy.integrate' (import-error)
pyrecest/distributions/hypersphere_subset/bingham_distribution.py:18:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.hyperspherical_dirac_distribution
pyrecest/distributions/hypersphere_subset/hyperspherical_dirac_distribution.py:1:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.spherical_harmonics_distribution_complex
pyrecest/distributions/hypersphere_subset/spherical_harmonics_distribution_complex.py:1:0: E0401: Unable to import 'scipy' (import-error)
pyrecest/distributions/hypersphere_subset/spherical_harmonics_distribution_complex.py:28:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.spherical_harmonics_distribution_real
pyrecest/distributions/hypersphere_subset/spherical_harmonics_distribution_real.py:16:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.von_mises_fisher_distribution
pyrecest/distributions/hypersphere_subset/von_mises_fisher_distribution.py:26:0: E0401: Unable to import 'scipy.special' (import-error)
pyrecest/distributions/hypersphere_subset/von_mises_fisher_distribution.py:74:8: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.distributions.hypersphere_subset.watson_distribution
pyrecest/distributions/hypersphere_subset/watson_distribution.py:1:0: E0401: Unable to import 'mpmath' (import-error)
pyrecest/distributions/hypersphere_subset/watson_distribution.py:2:0: E0401: Unable to import 'numpy.testing' (import-error)
************* Module pyrecest.distributions.hypertorus.abstract_hypertoroidal_distribution
pyrecest/distributions/hypertorus/abstract_hypertoroidal_distribution.py:4:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
pyrecest/distributions/hypertorus/abstract_hypertoroidal_distribution.py:35:0: E0401: Unable to import 'scipy.integrate' (import-error)
************* Module pyrecest.distributions.hypertorus.abstract_toroidal_distribution
pyrecest/distributions/hypertorus/abstract_toroidal_distribution.py:5:0: E0401: Unable to import 'scipy.integrate' (import-error)
************* Module pyrecest.distributions.hypertorus.hypertoroidal_dirac_distribution
pyrecest/distributions/hypertorus/hypertoroidal_dirac_distribution.py:5:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.distributions.hypertorus.hypertoroidal_wrapped_normal_distribution
pyrecest/distributions/hypertorus/hypertoroidal_wrapped_normal_distribution.py:22:0: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.distributions.hypertorus.toroidal_von_mises_sine_distribution
pyrecest/distributions/hypertorus/toroidal_von_mises_sine_distribution.py:4:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.distributions.hypertorus.toroidal_wrapped_normal_distribution
pyrecest/distributions/hypertorus/toroidal_wrapped_normal_distribution.py:1:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.distributions.nonperiodic.abstract_hyperrectangular_distribution
pyrecest/distributions/nonperiodic/abstract_hyperrectangular_distribution.py:3:0: E0401: Unable to import 'scipy.integrate' (import-error)
************* Module pyrecest.distributions.nonperiodic.abstract_linear_distribution
pyrecest/distributions/nonperiodic/abstract_linear_distribution.py:5:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
pyrecest/distributions/nonperiodic/abstract_linear_distribution.py:33:0: E0401: Unable to import 'scipy.integrate' (import-error)
pyrecest/distributions/nonperiodic/abstract_linear_distribution.py:34:0: E0401: Unable to import 'scipy.optimize' (import-error)
pyrecest/distributions/nonperiodic/abstract_linear_distribution.py:35:0: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.distributions.nonperiodic.gaussian_distribution
pyrecest/distributions/nonperiodic/gaussian_distribution.py:8:0: E0401: Unable to import 'scipy.linalg' (import-error)
pyrecest/distributions/nonperiodic/gaussian_distribution.py:48:12: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.distributions.nonperiodic.linear_dirac_distribution
pyrecest/distributions/nonperiodic/linear_dirac_distribution.py:1:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.evaluation.determine_all_deviations
pyrecest/evaluation/determine_all_deviations.py:3:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/evaluation/determine_all_deviations.py:4:0: E0401: Unable to import 'beartype' (import-error)
pyrecest/evaluation/determine_all_deviations.py:5:0: E0401: Unable to import 'beartype.typing' (import-error)
************* Module pyrecest.evaluation.eot_shape_database
pyrecest/evaluation/eot_shape_database.py:1:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/evaluation/eot_shape_database.py:2:0: E0401: Unable to import 'shapely.geometry' (import-error)
pyrecest/evaluation/eot_shape_database.py:3:0: E0401: Unable to import 'shapely.ops' (import-error)
pyrecest/evaluation/eot_shape_database.py:10:18: E1123: Unexpected keyword argument 'shell' in classmethod call (unexpected-keyword-arg)
pyrecest/evaluation/eot_shape_database.py:10:18: E1123: Unexpected keyword argument 'holes' in classmethod call (unexpected-keyword-arg)
pyrecest/evaluation/eot_shape_database.py:10:18: E1120: No value for argument 'cls' in classmethod call (no-value-for-parameter)
************* Module pyrecest.evaluation.evaluate_for_file
pyrecest/evaluation/evaluate_for_file.py:4:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/evaluation/evaluate_for_file.py:29:4: E1136: Value 'np.ndarray' is unsubscriptable (unsubscriptable-object)
************* Module pyrecest.evaluation.evaluate_for_simulation_config
pyrecest/evaluation/evaluate_for_simulation_config.py:4:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/evaluation/evaluate_for_simulation_config.py:5:0: E0401: Unable to import 'beartype' (import-error)
pyrecest/evaluation/evaluate_for_simulation_config.py:36:4: E1136: Value 'np.ndarray' is unsubscriptable (unsubscriptable-object)
************* Module pyrecest.evaluation.evaluate_for_variables
pyrecest/evaluation/evaluate_for_variables.py:5:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.evaluation.generate_groundtruth
pyrecest/evaluation/generate_groundtruth.py:1:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.evaluation.generate_measurements
pyrecest/evaluation/generate_measurements.py:1:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/evaluation/generate_measurements.py:2:0: E0401: Unable to import 'beartype' (import-error)
pyrecest/evaluation/generate_measurements.py:13:0: E0401: Unable to import 'scipy.stats' (import-error)
pyrecest/evaluation/generate_measurements.py:14:0: E0401: Unable to import 'shapely.affinity' (import-error)
pyrecest/evaluation/generate_measurements.py:15:0: E0401: Unable to import 'shapely.geometry' (import-error)
************* Module pyrecest.evaluation.generate_simulated_scenarios
pyrecest/evaluation/generate_simulated_scenarios.py:1:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.evaluation.get_distance_function
pyrecest/evaluation/get_distance_function.py:1:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/evaluation/get_distance_function.py:2:0: E0401: Unable to import 'numpy.linalg' (import-error)
************* Module pyrecest.evaluation.iterate_configs_and_runs
pyrecest/evaluation/iterate_configs_and_runs.py:4:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.evaluation.perform_predict_update_cycles
pyrecest/evaluation/perform_predict_update_cycles.py:4:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.evaluation.plot_results
pyrecest/evaluation/plot_results.py:3:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
pyrecest/evaluation/plot_results.py:4:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/evaluation/plot_results.py:5:0: E0401: Unable to import 'beartype' (import-error)
************* Module pyrecest.evaluation.simulation_database
pyrecest/evaluation/simulation_database.py:4:0: E0401: Unable to import 'beartype' (import-error)
************* Module pyrecest.evaluation.summarize_filter_results
pyrecest/evaluation/summarize_filter_results.py:3:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.filters.abstract_extended_object_tracker
pyrecest/filters/abstract_extended_object_tracker.py:3:0: E0401: Unable to import 'matplotlib.pyplot' (import-error)
************* Module pyrecest.filters.global_nearest_neighbor
pyrecest/filters/global_nearest_neighbor.py:3:0: E0401: Unable to import 'scipy.optimize' (import-error)
pyrecest/filters/global_nearest_neighbor.py:4:0: E0401: Unable to import 'scipy.spatial.distance' (import-error)
pyrecest/filters/global_nearest_neighbor.py:5:0: E0401: Unable to import 'scipy.stats' (import-error)
************* Module pyrecest.filters.hyperhemisphere_cart_prod_particle_filter
pyrecest/filters/hyperhemisphere_cart_prod_particle_filter.py:1:0: E0401: Unable to import 'numpy' (import-error)
pyrecest/filters/hyperhemisphere_cart_prod_particle_filter.py:2:0: E0401: Unable to import 'beartype' (import-error)
************* Module pyrecest.filters.hyperhemispherical_particle_filter
pyrecest/filters/hyperhemispherical_particle_filter.py:1:0: E0401: Unable to import 'numpy' (import-error)
************* Module pyrecest.filters.kalman_filter
pyrecest/filters/kalman_filter.py:3:0: E0401: Unable to import 'bayesian_filters.kalman' (import-error)
************* Module pyrecest.sampling.hyperspherical_sampler
pyrecest/sampling/hyperspherical_sampler.py:132:8: E0401: Unable to import 'healpy' (import-error)
pyrecest/sampling/hyperspherical_sampler.py:196:8: E0401: Unable to import 'pyshtools' (import-error)
pyrecest/sampling/hyperspherical_sampler.py:273:8: E0401: Unable to import 'healpy' (import-error)
************* Module pyrecest.sampling.leopardi_sampler
pyrecest/sampling/leopardi_sampler.py:27:0: E0401: Unable to import 'scipy.optimize' (import-error)
pyrecest/sampling/leopardi_sampler.py:28:0: E0401: Unable to import 'scipy.special' (import-error)
************* Module pyrecest.tests.distributions.test_abstract_dirac_distribution
pyrecest/tests/distributions/test_abstract_dirac_distribution.py:3:0: E0401: Unable to import 'matplotlib' (import-error)
************* Module pyrecest.tests.distributions.test_abstract_hypercylindrical_distribution
pyrecest/tests/distributions/test_abstract_hypercylindrical_distribution.py:3:0: E0401: Unable to import 'matplotlib' (import-error)
pyrecest/tests/distributions/test_abstract_hypercylindrical_distribution.py:4:0: E0401: Unable to import 'numpy.testing' (import-error)
************* Module pyrecest.tests.distributions.test_abstract_hyperhemispherical_distribution
pyrecest/tests/distributions/test_abstract_hyperhemispherical_distribution.py:3:0: E0401: Unable to import 'numpy.testing' (import-error)
************* Module pyrecest.tests.distributions.test_abstract_hypersphere_subset_dirac_distribution
pyrecest/tests/distributions/test_abstract_hypersphere_subset_dirac_distribution.py:17:0: E0401: Unable to import 'numpy.testing' (import-error)
************* Module pyrecest.tests.distributions.test_abstract_hypersphere_subset_distribution
pyrecest/tests/distributions/test_abstract_hypersphere_subset_distribution.py:4:0: E0401: Unable to import 'numpy.testing' (import-error)
pyrecest/tests/distributions/test_abstract_hypersphere_subset_distribution.py:6:0: E0401: Unable to import 'parameterized' (import-error)
pyrecest/tests/distributions/test_abstract_hypersphere_subset_distribution.py:25:0: E0401: Unable to import 'scipy.integrate' (import-error)
************* Module pyrecest.tests.distributions.test_abstract_hyperspherical_distribution
pyrecest/tests/distributions/test_abstract_hyperspherical_distribution.py:3:0: E0401: Unable to import 'matplotlib' (import-error)
************* Module pyrecest.tests.distributions.test_abstract_hypertoroidal_distribution
pyrecest/tests/distributions/test_abstract_hypertoroidal_distribution.py:3:0: E0401: Unable to import 'matplotlib' (import-error)
pyrecest/tests/distributions/test_abstract_hypertoroidal_distribution

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Test Results

    6 files   -     3      6 suites   - 3   36m 48s ⏱️ - 1h 16m 42s
  454 tests ±    0    454 ✅ ±  0    0 💤 ±  0  0 ❌ ±0 
2 868 runs   - 1 377  2 700 ✅  - 855  168 💤  - 522  0 ❌ ±0 

Results for commit 970d1fa. ± Comparison against base commit ad6def2.

♻️ This comment has been updated with latest results.