using GitHub as source for cmdstanr

Author: JBris

.env

@@ -7,4 +7,5 @@ R_SEED=100
 RENV_PATHS_CACHE=/home/${R_STUDIO_USER}/.local/share/renv/
 
 # Stan
-CMDSTAN_VERSION=2.32.1
+CMDSTAN_VERSION=2.32.1
+CMDSTANR_VERSION=0.5.3

Dockerfile

@@ -33,9 +33,11 @@ RUN cd /usr/share/ \
 
 ENV DOWNLOAD_STATIC_LIBV8 1
 
-RUN install2.r --error --skipmissing --skipinstalled -n -1 rstan
+RUN install2.r --error --skipmissing --skipinstalled -n -1 rstan remotes
 
-RUN Rscript -e 'install.packages("cmdstanr", repos = c("https://mc-stan.org/r-packages/", getOption("repos")))' 
+ARG CMDSTANR_VERSION
+
+RUN Rscript -e 'remotes::install_github( paste0("stan-dev/cmdstanr@v", Sys.getenv("CMDSTANR_VERSION")) )' 
 
 RUN install2.r --error --skipmissing --skipinstalled -n -1 \
   renv \

docker-compose.yaml

@@ -19,16 +19,13 @@ services:
       args:
         TIDYVERSE_TAG: $TIDYVERSE_TAG
         CMDSTAN_VERSION: $CMDSTAN_VERSION
+        CMDSTANR_VERSION: $CMDSTANR_VERSION
     ports:
       - ${R_STUDIO_PORT}:8787 
     mem_limit: 6g
     mem_reservation: 2g
     volumes:
       - ./r_home:/home
-      - r-packages-data:${RENV_PATHS_CACHE}
-
-volumes:
-  r-packages-data:
 
 networks:
   default: