Python fragmentation #94
Description
I want to be able to optimize and then fragment using all python. Test protein:
SGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGTSGRGGLGGQGAGMAAAAAMGGAGQGGYGGLGSQGT