No studies match the current filter. Try showing more options.
");
- return;
- }
- designs.sort(function (a, b) {
- return a.studyDefinition.name.localeCompare(b.studyDefinition.name);
- });
- Ext.get("result").update("");
- for (var i = 0; i < designs.length; i++)
- {
- //var design = result.studyDesigns[i].studyDefinition;
- Ext.get("result").insertHtml("beforeEnd", getStudyOverview(designs[i]));
- }
- }
-
- function h(s) {
- if (null == s)
- return "";
- else
- return LABKEY.Utils.encodeHtml(s);
- }
-
- function getStudyOverview(info) {
- var design = info.studyDefinition;
- var html = "| " +"" + - "" + - h(design.name) + " | "; - html += "" + (design.animalSpecies ? h(design.animalSpecies) : " ") + " | "; - html += "" + h(design.investigator) + " |
| ";
-
- if (design.description)
- html+= h(design.description) +" "; - - html += "Immunogens: "; - var immunogenNames = []; - if (design.immunogens) { - for (var i = 0; i < design.immunogens.length; i++) - immunogenNames.push(immunogenSummary(design.immunogens[i])); - } - html += (immunogenNames.length ? immunogenNames.join(", ") : "(none)") + " "; - - html += "Adjuvants: "; - var adjuvantNames = []; - if (design.adjuvants) { - for (var i = 0; i < design.adjuvants.length; i++) - adjuvantNames.push(design.adjuvants[i].name); - } - html += (adjuvantNames.length ? h(adjuvantNames.join(", ")) : "(none)") + " "; - - html += graphicalVaccinationSummary(design); - return html; - - } - -function immunogenSummary(immunogen) -{ - var ret = "" + h(immunogen.name) + ""; - if (immunogen.type) - ret += ", " + immunogen.type; - if (immunogen.admin) - ret += ", " + immunogen.admin; - - if (immunogen.antigens) - { - var a = []; - for (var i = 0; i < immunogen.antigens.length; i++) - if (immunogen.antigens[i]) - a.push(h(immunogen.antigens[i].name)); - - if (a.length) - ret += " (" + a.join(", ") + ") "; - } - return ret; -} - -function graphicalVaccinationSummary(design) -{ - if (null == design.immunizations || design.immunizations.length == 0) - return ""; - - var html = ""; - var timepoints = []; - var timepointMap = {}; - for (var i = 0; i < design.immunizations.length; i++) - { - var immunization = design.immunizations[i]; - //Some "blank" immunizations have crept in. - if (null == immunization.adjuvants && null == immunization.immunogens) - continue; - if (timepointMap[immunization.timepoint.days]) - continue; - timepointMap[immunization.timepoint.days] = immunization.timepoint; - timepoints.push(immunization.timepoint); - } - if (timepoints.length == 0) - return ""; - - timepoints.sort(function(a, b) { - return a.days - b.days; - }); - - var PIXELS_PER_DAY = 8; - var IMG_WIDTH = 16; - var ZERO_OFFSET = 150; - var imgSrc = LABKEY.contextPath + "/viscstudies/syringeSmall.gif"; - var left = Ext.get("result").getLeft(); - html += " ";
- for (var tpi = 0; tpi < timepoints.length; tpi++)
- {
- var week = Math.round(timepoints[tpi].days / 7);
- var iconLeft = left + ZERO_OFFSET + (week * 7 * PIXELS_PER_DAY )- (IMG_WIDTH /2);
- html += "" + week + "";
- }
- html += " ";
-
- for (var ci = 0; ci < design.cohorts.length; ci++)
- {
- html += "";
- for (var tpi = 0; tpi < timepoints.length; tpi++)
- {
- var vaccination = findVaccination(design, design.cohorts[ci], timepoints[tpi]);
- if (null != vaccination)
- {
- var components = [];
- if (vaccination.immunogens)
- components = components.concat(vaccination.immunogens);
- if (vaccination.adjuvants)
- components = components.concat(vaccination.adjuvants);
- var iconLeft = left + ZERO_OFFSET + (vaccination.timepoint.days * PIXELS_PER_DAY )- (IMG_WIDTH /2);
- html += " ";
-
- }
-
- return html + "" + components.join(" | ") + " "
- +"";
- }
- }
- html += " | ||
| header | ![](" + LABKEY.contextPath + "/viscstudies/syringe.jpg) |
| "; - var timepoints = []; - var timepointMap = {}; - for (var i = 0; i < design.immunizations.length; i++) - { - var immunization = design.immunizations[i]; - //Some "blank" immunizations have crept in. - if (null == immunization.adjuvants && null == immunization.immunogens) - continue; - if (timepointMap[immunization.timepoint.days]) - continue; - timepointMap[immunization.timepoint.days] = immunization.timepoint; - timepoints.push(immunization.timepoint); - } - if (timepoints.length == 0) - return ""; - - timepoints.sort(function(a, b) { - return a.days - b.days; - }); - - for (var tpi = 0; tpi < timepoints.length; tpi++) - html += " | " + h(timepoints[tpi].name) + " | "; - html += "|
|---|---|---|
| " + h(design.cohorts[ci].name) + " (" + design.cohorts[ci].count + ")" + " | "; - for (var tpi = 0; tpi < timepoints.length; tpi++) - { - var vaccination = findVaccination(design, design.cohorts[ci], timepoints[tpi]); - if (null == vaccination) - html += ""; - else - { - var components = []; - if (vaccination.immunogens) - components = components.concat(vaccination.immunogens); - if (vaccination.adjuvants) - components = components.concat(vaccination.adjuvants); - html += " | " + components.join(" | ") + " | "; - } - } - html += "
"; - } - -function findVaccination(design, cohort, timepoint) -{ - for (var i = 0; i < design.immunizations.length; i++) - { - var immunization = design.immunizations[i]; - if (immunization.groupName == cohort.name && immunization.timepoint.days == timepoint.days) - return immunization; - } - return null; -} - -function addIfNotPresent(array, value) -{ - var isobj = typeof value == 'object'; - var id = isobj ? value.id : null; - - for (var i = 0; i < array.length; i++) - { - if (value == array[i] || (isobj && id == array[i].id)) - return; - } - - array.push(value); -} - -function Facet(id, caption, getOptionsFn) { - this.allOptions = []; - this.id = id; - this.caption = caption; - this.getOptionsForStudy = getOptionsFn; - this.selected = {}; -} - -Facet.prototype = { - allOptions:[], - - setSelected:function(index, selected) { - this.selected[this.allOptions[index].name] = selected; - }, - - isSelected:function(index) { - return this.selected[this.allOptions[index].name]; - }, - - selectAll:function() { - for (var i = 0; i < this.allOptions.length; i++) - this.selected[this.allOptions[i].name] = true; - }, - - selectOnly:function(index) { - var sel = {}; - sel[this.allOptions[index].name] = true; - this.selected = sel; - }, - - init:function(infos) { - var seen = {}; - for (var i = 0; i < infos.length; i++) - { - var optionsForStudy = this.getOptionsForStudy(infos[i]); - for (var j = 0; j < optionsForStudy.length; j++) - { - if(!seen[optionsForStudy[j].name]) - { - seen[optionsForStudy[j].name] = true; - this.allOptions.push(optionsForStudy[j]); - } - } - } - this.allOptions.sort(function(a, b) { return a.name.localeCompare(b.name); }); - this.selected = seen; //All selected initially - }, - - getMatchingDesigns:function (infos) { - var ret = []; - for (var i = 0; i < infos.length; i++) - { - var optionsForStudy = this.getOptionsForStudy(infos[i]); - for (var j = 0; j < optionsForStudy.length; j++) - { - if (this.selected[optionsForStudy[j].name]) - { - ret.push(infos[i]); - break; - } - } - } - return ret; - } -}; - -var investigatorFacet = new Facet("investigators", "Investigators", function(info) { - return [{name:info.studyDefinition.investigator}]; - }); - -var speciesFacet = new Facet("species", "Species", function (info) { - return [{name:info.studyDefinition.animalSpecies ? info.studyDefinition.animalSpecies : "(none)"}]; -}); - -var adjuvantFacet = new Facet("adjuvants", "Adjuvants", function (info) { - var design = info.studyDefinition; - var options = []; - if (design.adjuvants) { - for (var i = 0; i < design.adjuvants.length; i++) - options.push({name:design.adjuvants[i].name}); - } - else - options.push({name:"(none)"}); - - return options; -}); - -var immunogenFacet = new Facet("immunogens", "Immunogens", function (info) { - var design = info.studyDefinition; - var options = []; - if (design.immunogens) { - for (var i = 0; i < design.immunogens.length; i++) - options.push({name:design.immunogens[i].name}); - } - else - options.push({name:"(none)"}); - - return options; -}); - -var facets = [immunogenFacet, investigatorFacet, speciesFacet, adjuvantFacet]; -function initFacets() -{ - for (let f = 0; f < facets.length; f++) - { - var facet = facets[f]; - var header = "
" + h(facet.caption) + "
Showing all " + h(facet.caption) + " "; - var html = ""; - html += "Show All" ; - facet.init(_allStudies); - html += "
| ";
- const colLength = Math.round(facet.allOptions.length / 3);
- for (let i = 0; i < facet.allOptions.length; i++)
- {
- let option = facet.allOptions[i];
- html += "";
- html += ""+ h(option.name) + " "; - if (i === colLength || i === colLength * 2) - html += " | "; - } - html += " |