packages and versions needed for running heatmap script

[sannareddyk]

Hi Konstantinos, could you please include documentation on packages and versions needed (that can be added to the wochenende env -already has numpy, matplotlib, pandas) to run heatmap script.
ex. seaborn package, scipy.cluster etc

[colindaven]

pip list --format freeze

[colindaven]

To get you started Keerthi, these versions might be useful
Done as rcug_lw
on hpc06, where I think @konnosif was working....

pip list --format freeze > requirements.txt

Run as (not working yet ...)
pip3 install --user -r requirements.txt

[konnosif]

I have uploaded a requirements.txt file that has some information about requirements.
I hope all have access to it.

• i will try to use : pip list --format freeze > requirements.txt

and update it (however as you know i am using different machine then you do with RCUG servers)

[colindaven]

Thanks @konnosif your version will probably be a lot more focused on what we actually need. I removed the top anndata line from my list above as it caused an error -package not found.

[sannareddyk]

Hi @konnosif I cannot access the requirements.txt file, did you upload it on github?

[colindaven]

I am having more success using a python, not conda virtualenv @sannareddyk

See docs here

http://hpc-web1.mh-hannover.local/doku.php?id=python#python_virtualenvs

[sannareddyk]

Thanks @konnosif and @colindaven ..will try python virtual env