Quick fix for issue #1208 TypeError: imsave() and

Jiadalee · Jiadalee · commit d0df00c608f1 · 2025-06-04T15:25:15.000-04:00
io.save_rois()
diff --git a/notebooks/run_Cellpose-SAM.ipynb b/notebooks/run_Cellpose-SAM.ipynb
@@ -358,8 +358,8 @@
       "source": [
         "for i in trange(len(files)):\n",
         "    f = files[i]\n",
-        "    masks0 = io.imsave(dir / (f.name + \"_masks\" + masks_ext))\n",
-        "    io.save_rois(masks0, f)"
+        "    io.imsave(dir / (f.name + \"_masks\" + masks_ext), masks[i])\n",
+        "    io.save_rois(masks[i], f)"
       ]
     }
   ],

Original file line number	Diff line number	Diff line change
`@@ -358,8 +358,8 @@`
`358`	`358`	`"source": [`
`359`	`359`	`"for i in trange(len(files)):\n",`
`360`	`360`	`" f = files[i]\n",`
`361`		`- " masks0 = io.imsave(dir / (f.name + \"_masks\" + masks_ext))\n",`
`362`		`- " io.save_rois(masks0, f)"`
	`361`	`+ " io.imsave(dir / (f.name + \"_masks\" + masks_ext), masks[i])\n",`
	`362`	`+ " io.save_rois(masks[i], f)"`
`363`	`363`	`]`
`364`	`364`	`}`
`365`	`365`	`],`