import pyctb changes plotting behavior in spyder

[hsauro]

If I import psctb into the spyder IDE (in windows), it changes the plotting behavior so that instead of the plot appearing in the spyder plot window it now appears as a floating window but with a much reduced size and no plot. Attempting to close this floating window crashes python. At this point the python kernel has to be restarted.

[jmrohwer]

At this point spyder IDE is not supported. PyscesToolbox has been designed to work with Jupyter Notebooks making use of ipywidgets for interactive plots and d3networkx-psctb to render pathways. Refer to:
https://pyscestoolbox.readthedocs.io/en/latest/installation.html
https://pyscestoolbox.readthedocs.io/en/latest/basic_usage.html

The widgets have not been tested with spyder IDE and are not guaranteed to work. Of course, patches to implement this functionality are welcome 😃

[hsauro]

I might try to look at your code over the holidays. I suspect it's either some dedicated jupyter calls that are incompatible with the ide or the plotting backend is incompatible with spyder. Currently I do the symca calls first then restart the IDE to continue so it's not that disruptive. I don't use the plotting facilities, just the symbolic derivation of control equations.

…

On Sun, Dec 17, 2023 at 1:23 AM Johann Rohwer ***@***.***> wrote: At this point spyder IDE is not supported. PyscesToolbox has been designed to work with Jupyter Notebooks making use of ipywidgets for interactive plots and d3networkx-psctb to render pathways. Refer to: https://pyscestoolbox.readthedocs.io/en/latest/installation.html <https://urldefense.com/v3/__https://pyscestoolbox.readthedocs.io/en/latest/installation.html__;!!K-Hz7m0Vt54!j9mlifSB992YEtsGgj3vpccxHrtqhGN2Lj1RrIHUd-qaSHaGjJ2W-PpoRpG8xysRjh8HgkgD_ik1jnizKmnNzJZjo8ARsg$> https://pyscestoolbox.readthedocs.io/en/latest/basic_usage.html <https://urldefense.com/v3/__https://pyscestoolbox.readthedocs.io/en/latest/basic_usage.html__;!!K-Hz7m0Vt54!j9mlifSB992YEtsGgj3vpccxHrtqhGN2Lj1RrIHUd-qaSHaGjJ2W-PpoRpG8xysRjh8HgkgD_ik1jnizKmnNzJYzqO5EDg$> The widgets have not been tested with spyder IDE and are not guaranteed to work. Of course, patches to implement this functionality are welcome 😃 — Reply to this email directly, view it on GitHub <https://urldefense.com/v3/__https://github.com/PySCeS/PyscesToolbox/issues/7*issuecomment-1859084173__;Iw!!K-Hz7m0Vt54!j9mlifSB992YEtsGgj3vpccxHrtqhGN2Lj1RrIHUd-qaSHaGjJ2W-PpoRpG8xysRjh8HgkgD_ik1jnizKmnNzJYHM0oxpQ$>, or unsubscribe <https://urldefense.com/v3/__https://github.com/notifications/unsubscribe-auth/AAIBSDQGO7QRAUWMUZADU73YJ22ZZAVCNFSM6AAAAABANOOLSKVHI2DSMVQWIX3LMV43OSLTON2WKQ3PNVWWK3TUHMYTQNJZGA4DIMJXGM__;!!K-Hz7m0Vt54!j9mlifSB992YEtsGgj3vpccxHrtqhGN2Lj1RrIHUd-qaSHaGjJ2W-PpoRpG8xysRjh8HgkgD_ik1jnizKmnNzJZl4yE5YA$> . You are receiving this because you authored the thread.Message ID: ***@***.***>

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