Apply the blocklist for general items before overlaying with NGD. Eg "What is water related to"
{
"edges": {
"e00": {
"subject": "n00",
"object": "n01",
"predicates": ["biolink:related_to"]
}
},
"nodes": {
"n00": {
"ids": ["CHEBI:15377"]
},
"n01": {
"categories": ["biolink:Protein"]
}
}
}
takes about 4.6 min, of which 4min is devoted to overlaying NGD edges on nodes that will get filtered out of the block list.