Paper featuring this work:
"Taming the reference genome jungle: the refget sequence collection standard"
https://www.biorxiv.org/content/10.1101/2025.10.06.680641v1.full.pdf
This repository contains scripts for:
- Downloading and processing FASTA files from various reference genome providers (brickyard_download).
- Comparing sequence collections from FASTA files of downloaded reference genomes (seq_col_comparison).
See the corresponding README.md in each folder for operating instructions.