Skip to content

Split guessing fails with long reads #126

@lbergelson

Description

@lbergelson

One of our developers noticed that using disq to read bams with VERY long reads (some as long as 90 megabases), is failing. Tools report success but drop all or most of the reads in the file silently.

After some investigation we've found that using a splitting index with granularity 1 fixes the problem. So it seems like there's some issue with split guessing failing on long reads.

Metadata

Metadata

Assignees

No one assigned

    Labels

    bugSomething isn't working

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions