Installing LISFLOOD via WSL #176
Description
I am trying to install lisflood by using the python source code. I installed the latest anaconda version which is 24.9.2 , and it is located under home/username directory as a default. I also cloned the master branch of the repository, then followed the second steps as creating a lisflood invironment. However, after running to "pip install -r requirements.txt" code line in the wsl terminal (ubuntu) I get an error about GDAL that provided below.
Collecting attrs>=19.3.0 (from -r requirements.txt (line 1))
Downloading attrs-24.2.0-py3-none-any.whl.metadata (11 kB)
Collecting beautifulsoup4>=4.8.1 (from -r requirements.txt (line 2))
Downloading beautifulsoup4-4.12.3-py3-none-any.whl.metadata (3.8 kB)
Collecting cftime>=1.0.4.2 (from -r requirements.txt (line 3))
Downloading cftime-1.6.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.4 kB)
Collecting coverage>=6.0 (from -r requirements.txt (line 4))
Downloading coverage-7.2.7-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (9.7 kB)
Collecting dask>=2021.10.0 (from -r requirements.txt (line 5))
Downloading dask-2022.2.0-py3-none-any.whl.metadata (3.0 kB)
Collecting future>=0.18.0 (from -r requirements.txt (line 6))
Downloading future-1.0.0-py3-none-any.whl.metadata (4.0 kB)
Collecting GDAL>=3.2.0 (from -r requirements.txt (line 7))
Downloading GDAL-3.8.5.tar.gz (802 kB)
━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 802.6/802.6 kB 6.9 MB/s eta 0:00:00
Preparing metadata (setup.py) ... error
error: subprocess-exited-with-error
× python setup.py egg_info did not run successfully.
│ exit code: 1
╰─> [45 lines of output]
running egg_info
creating /tmp/pip-pip-egg-info-15tp1kqs/GDAL.egg-info
writing /tmp/pip-pip-egg-info-15tp1kqs/GDAL.egg-info/PKG-INFO
writing dependency_links to /tmp/pip-pip-egg-info-15tp1kqs/GDAL.egg-info/dependency_links.txt
writing requirements to /tmp/pip-pip-egg-info-15tp1kqs/GDAL.egg-info/requires.txt
writing top-level names to /tmp/pip-pip-egg-info-15tp1kqs/GDAL.egg-info/top_level.txt
writing manifest file '/tmp/pip-pip-egg-info-15tp1kqs/GDAL.egg-info/SOURCES.txt'
Traceback (most recent call last):
File "", line 36, in
File "", line 34, in
File "/tmp/pip-install-zwvv7yxl/gdal_e93c1391a03e4db19467864eae57fe83/setup.py", line 382, in
exclude_package_data = exclude_package_data,
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/init.py", line 103, in setup
return distutils.core.setup(**attrs)
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/core.py", line 185, in setup
return run_commands(dist)
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/core.py", line 201, in run_commands
dist.run_commands()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 969, in run_commands
self.run_command(cmd)
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/dist.py", line 963, in run_command
super().run_command(command)
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/dist.py", line 988, in run_command
cmd_obj.run()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/command/egg_info.py", line 321, in run
self.find_sources()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/command/egg_info.py", line 329, in find_sources
mm.run()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/command/egg_info.py", line 551, in run
self.add_defaults()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/command/egg_info.py", line 589, in add_defaults
sdist.add_defaults(self)
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/command/sdist.py", line 112, in add_defaults
super().add_defaults()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/command/sdist.py", line 251, in add_defaults
self._add_defaults_ext()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/command/sdist.py", line 335, in _add_defaults_ext
build_ext = self.get_finalized_command('build_ext')
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/cmd.py", line 305, in get_finalized_command
cmd_obj.ensure_finalized()
File "/home/ersat/anaconda3/envs/lisflood/lib/python3.7/site-packages/setuptools/_distutils/cmd.py", line 111, in ensure_finalized
self.finalize_options()
File "/tmp/pip-install-zwvv7yxl/gdal_e93c1391a03e4db19467864eae57fe83/setup.py", line 235, in finalize_options
raise Exception(f"Python bindings of GDAL {version} require at least libgdal {version}, but {library_version} was found")
Exception: Python bindings of GDAL 3.8.5 require at least libgdal 3.8.5, but 3.5.3 was found
[end of output]
note: This error originates from a subprocess, and is likely not a problem with pip.
error: metadata-generation-failed
× Encountered error while generating package metadata.
╰─> See above for output.
note: This is an issue with the package mentioned above, not pip.
hint: See above for details.
I have tried to solve this problem by updating libgdal package but it does not work.