Merge pull request #48 from eli5-org/py39

Drop python<3.9, support modern libraries

Author: lopuhin

.github/workflows/python-package.yml

@@ -17,26 +17,24 @@ jobs:
       fail-fast: false
       matrix:
         include:
-            - python-version: '3.6'
+            - python-version: '3.10'
               tox-env: 'mypy'
-            - python-version: '3.9'
+            - python-version: '3.10'
               tox-env: 'docs'
-            - python-version: '3.6'
-              tox-env: 'py36'
-            - python-version: '3.6'
-              tox-env: 'py36-nodeps'
-            - python-version: '3.6'
-              tox-env: 'py36-extra'
-            - python-version: '3.7'
-              tox-env: 'py37'
-            - python-version: '3.8'
-              tox-env: 'py38'
-            - python-version: '3.8'
-              tox-env: 'py38-nodeps'
             - python-version: '3.9'
               tox-env: 'py39'
-            - python-version: '3.9'
-              tox-env: 'py39-nodeps'
+            - python-version: '3.10'
+              tox-env: 'py310'
+            - python-version: '3.10'
+              tox-env: 'py310-nodeps'
+            - python-version: '3.10'
+              tox-env: 'py310-extra'
+            - python-version: '3.11'
+              tox-env: 'py311'
+            - python-version: '3.12'
+              tox-env: 'py312'
+            - python-version: '3.13'
+              tox-env: 'py313'
 
     steps:
     - uses: actions/checkout@v2

CHANGES.rst

@@ -1,6 +1,12 @@
 Changelog
 =========
 
+0.14.0 (?)
+-------------------
+
+* drop support for python 3.6, 3.7, 3.8
+* add support for python 3.11, 3.12, 3.13
+
 0.13.0 (2022-05-11)
 -------------------
 

_ci/runtests_default.sh

@@ -4,5 +4,5 @@ sphinx_rtd_theme
 ipython
 scipy
 numpy > 1.9.0
-scikit-learn >= 0.20
-typing
+pandas
+scikit-learn >= 1.6.0

_ci/runtests_default_with_crfsuite.sh

@@ -54,7 +54,7 @@ def __getattr__(cls, name):
     'keras.models',
     'keras.layers',
     'keras.preprocessing.image',
-    'pandas',
+    # 'pandas',
     'PIL',
     'matplotlib',
     'matplotlib.pyplot',
@@ -69,7 +69,7 @@ def __getattr__(cls, name):
 
 def setup(app):
     # see https://github.com/snide/sphinx_rtd_theme/issues/117
-    app.add_stylesheet("rtfd_overrides.css")
+    app.add_css_file("rtfd_overrides.css")
 
 suppress_warnings = ['image.nonlocal_uri']
 
@@ -123,7 +123,7 @@ def setup(app):
 #
 # This is also used if you do content translation via gettext catalogs.
 # Usually you set "language" from the command line for these cases.
-language = None
+language = 'en'
 
 # There are two options for replacing |today|: either, you set today to some
 # non-false value, then it is used:

_ci/runtests_extra.sh

@@ -8,7 +8,7 @@ Keras_ is "a high-level neural networks API, written in Python and capable of ru
 Keras can be used for many Machine Learning tasks, and it has support for both popular
 and experimental neural network architectures.
 
-Note: only TensorFlow 1.x is supported, recommended Keras version is 2.3.1 or earlier.
+Note: only TensorFlow 1.x is supported, recommended Keras version is 2.3.1 or earlier, and eli5 version 0.13 or earlier, as you can't install TensorFlow 1.x on Python 3.9+ which is required for eli5 0.14+
 
 .. _Keras: https://keras.io/
 

_ci/runtests_nodeps.sh

@@ -6,7 +6,9 @@ XGBoost
 XGBoost_ is a popular Gradient Boosting library with Python interface.
 eli5 supports :func:`eli5.explain_weights` and :func:`eli5.explain_prediction`
 for XGBClassifer_, XGBRegressor_ and Booster_ estimators. It is tested for
-xgboost >= 0.6a2.
+xgboost >= 0.6a2 and < 2.0.0.
+Versions starting from 2.0.0 likely produce incorrect results in
+:func:`eli5.explain_prediction`, and will issue a warning.
 
 .. _XGBoost: https://github.com/dmlc/xgboost
 .. _XGBClassifer: https://xgboost.readthedocs.io/en/latest/python/python_api.html#xgboost.XGBClassifier