Tools work with Illumina 1.3-1.7 sequence identifiers plus any that have had /1 and /2 added, but do not work with default Illumina 1.8+ sequence identifiers.
MTS Repos:
https://toolshed.g2.bx.psu.edu/view/devteam/fastq_paired_end_interlacer/effda79f510c
https://toolshed.g2.bx.psu.edu/view/devteam/fastq_paired_end_deinterlacer/462abc5618ba
Perhaps bundle with this change: #487