Enhanced GFF updating #135
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--gffoption tosplitasm, allowing user to avoid splitting the assembly at gaps that intersect features in a gff. Gff parsing conventions match (and import a function from) theragtag_correct.py-storagtag_update_gff.pythat works similar to-cfor the case of correcting a gff that has been split bysplitasm. When enabled, it handles gaps in the AGP by simply skipping any gff feature that spans multiple sequences, logging a warning to the screen. Any child features of a parent overlapping a gap will also be skipped to prevent output of orphan features, e.g a stop codon after the gap.Outside of feature enhancements, all current behavior and functionality is exactly preserved.