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Description
python traj2dcd.py --input xxx.pdb --output xxx.dcd --pdb xxx.pdb --num-atoms nnn --stride nnn
arguments
--input The name of the input trajectory file
--output The name of the output trajectory file
--pdb The reference pdb file corresponding to the input trajectory
--num-atoms The number of atoms for protein or the whole solvated system
--stride The frequency to output the trajectory.
Here I suppose the --input should be XXX.traj file instead of xxx.pdb, which is probably a typo.
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