Skip to content

Conversation

@prototaxites
Copy link
Contributor

@prototaxites prototaxites commented Nov 3, 2025

Correctly export the _JAVA_OPTIONS envvar so that juicertools can allocate memory.

PR checklist

Closes #XXX

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the module conventions in the contribution docs
  • If necessary, include test data in your PR.
  • Remove all TODO statements.
  • Emit the versions.yml file.
  • Follow the naming conventions.
  • Follow the parameters requirements.
  • Follow the input/output options guidelines.
  • Add a resource label
  • Use BioConda and BioContainers if possible to fulfil software requirements.
  • Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
    • For modules:
      • nf-core modules test <MODULE> --profile docker
      • nf-core modules test <MODULE> --profile singularity
      • nf-core modules test <MODULE> --profile conda
    • For subworkflows:
      • nf-core subworkflows test <SUBWORKFLOW> --profile docker
      • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
      • nf-core subworkflows test <SUBWORKFLOW> --profile conda

@prototaxites prototaxites added this pull request to the merge queue Nov 3, 2025
@prototaxites
Copy link
Contributor Author

Thanks @mashehu!

Merged via the queue into nf-core:master with commit ea3e4d5 Nov 3, 2025
22 checks passed
@prototaxites prototaxites deleted the juicer branch November 3, 2025 16:15
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants