From ec9616e76a91e40ef1e6f83749c9f674e961832f Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Wed, 26 Oct 2022 13:07:48 -0400 Subject: [PATCH 001/220] create react app --- app/.gitignore | 23 ++++++++++++ app/README.md | 70 +++++++++++++++++++++++++++++++++++++ app/package.json | 38 ++++++++++++++++++++ app/public/favicon.ico | Bin 0 -> 3870 bytes app/public/index.html | 43 +++++++++++++++++++++++ app/public/logo192.png | Bin 0 -> 5347 bytes app/public/logo512.png | Bin 0 -> 9664 bytes app/public/manifest.json | 25 +++++++++++++ app/public/robots.txt | 3 ++ app/src/App.css | 38 ++++++++++++++++++++ app/src/App.js | 25 +++++++++++++ app/src/App.test.js | 8 +++++ app/src/index.css | 13 +++++++ app/src/index.js | 17 +++++++++ app/src/logo.svg | 1 + app/src/reportWebVitals.js | 13 +++++++ app/src/setupTests.js | 5 +++ 17 files changed, 322 insertions(+) create mode 100644 app/.gitignore create mode 100644 app/README.md create mode 100644 app/package.json create mode 100644 app/public/favicon.ico create mode 100644 app/public/index.html create mode 100644 app/public/logo192.png create mode 100644 app/public/logo512.png create mode 100644 app/public/manifest.json create mode 100644 app/public/robots.txt create mode 100644 app/src/App.css create mode 100644 app/src/App.js create mode 100644 app/src/App.test.js create mode 100644 app/src/index.css create mode 100644 app/src/index.js create mode 100644 app/src/logo.svg create mode 100644 app/src/reportWebVitals.js create mode 100644 app/src/setupTests.js diff --git a/app/.gitignore b/app/.gitignore new file mode 100644 index 00000000..4d29575d --- /dev/null +++ b/app/.gitignore @@ -0,0 +1,23 @@ +# See https://help.github.com/articles/ignoring-files/ for more about ignoring files. + +# dependencies +/node_modules +/.pnp +.pnp.js + +# testing +/coverage + +# production +/build + +# misc +.DS_Store +.env.local +.env.development.local +.env.test.local +.env.production.local + +npm-debug.log* +yarn-debug.log* +yarn-error.log* diff --git a/app/README.md b/app/README.md new file mode 100644 index 00000000..58beeacc --- /dev/null +++ b/app/README.md @@ -0,0 +1,70 @@ +# Getting Started with Create React App + +This project was bootstrapped with [Create React App](https://github.com/facebook/create-react-app). + +## Available Scripts + +In the project directory, you can run: + +### `npm start` + +Runs the app in the development mode.\ +Open [http://localhost:3000](http://localhost:3000) to view it in your browser. + +The page will reload when you make changes.\ +You may also see any lint errors in the console. + +### `npm test` + +Launches the test runner in the interactive watch mode.\ +See the section about [running tests](https://facebook.github.io/create-react-app/docs/running-tests) for more information. + +### `npm run build` + +Builds the app for production to the `build` folder.\ +It correctly bundles React in production mode and optimizes the build for the best performance. + +The build is minified and the filenames include the hashes.\ +Your app is ready to be deployed! + +See the section about [deployment](https://facebook.github.io/create-react-app/docs/deployment) for more information. + +### `npm run eject` + +**Note: this is a one-way operation. Once you `eject`, you can't go back!** + +If you aren't satisfied with the build tool and configuration choices, you can `eject` at any time. This command will remove the single build dependency from your project. + +Instead, it will copy all the configuration files and the transitive dependencies (webpack, Babel, ESLint, etc) right into your project so you have full control over them. All of the commands except `eject` will still work, but they will point to the copied scripts so you can tweak them. At this point you're on your own. + +You don't have to ever use `eject`. The curated feature set is suitable for small and middle deployments, and you shouldn't feel obligated to use this feature. However we understand that this tool wouldn't be useful if you couldn't customize it when you are ready for it. + +## Learn More + +You can learn more in the [Create React App documentation](https://facebook.github.io/create-react-app/docs/getting-started). + +To learn React, check out the [React documentation](https://reactjs.org/). + +### Code Splitting + +This section has moved here: [https://facebook.github.io/create-react-app/docs/code-splitting](https://facebook.github.io/create-react-app/docs/code-splitting) + +### Analyzing the Bundle Size + +This section has moved here: [https://facebook.github.io/create-react-app/docs/analyzing-the-bundle-size](https://facebook.github.io/create-react-app/docs/analyzing-the-bundle-size) + +### Making a Progressive Web App + +This section has moved here: [https://facebook.github.io/create-react-app/docs/making-a-progressive-web-app](https://facebook.github.io/create-react-app/docs/making-a-progressive-web-app) + +### Advanced Configuration + +This section has moved here: [https://facebook.github.io/create-react-app/docs/advanced-configuration](https://facebook.github.io/create-react-app/docs/advanced-configuration) + +### Deployment + +This section has moved here: [https://facebook.github.io/create-react-app/docs/deployment](https://facebook.github.io/create-react-app/docs/deployment) + +### `npm run build` fails to minify + +This section has moved here: [https://facebook.github.io/create-react-app/docs/troubleshooting#npm-run-build-fails-to-minify](https://facebook.github.io/create-react-app/docs/troubleshooting#npm-run-build-fails-to-minify) diff --git a/app/package.json b/app/package.json new file mode 100644 index 00000000..953f26d7 --- /dev/null +++ b/app/package.json @@ -0,0 +1,38 @@ +{ + "name": "app", + "version": "0.1.0", + "private": true, + "dependencies": { + "@testing-library/jest-dom": "^5.16.5", + "@testing-library/react": "^13.4.0", + "@testing-library/user-event": "^13.5.0", + "react": "^18.2.0", + "react-dom": "^18.2.0", + "react-scripts": "5.0.1", + "web-vitals": "^2.1.4" + }, + "scripts": { + "start": "react-scripts start", + "build": "react-scripts build", + "test": "react-scripts test", + "eject": "react-scripts eject" + }, + "eslintConfig": { + "extends": [ + "react-app", + "react-app/jest" + ] + }, + "browserslist": { + "production": [ + ">0.2%", + "not dead", + "not op_mini all" + ], + "development": [ + "last 1 chrome version", + "last 1 firefox version", + "last 1 safari version" + ] + } +} diff --git a/app/public/favicon.ico b/app/public/favicon.ico new file mode 100644 index 0000000000000000000000000000000000000000..a11777cc471a4344702741ab1c8a588998b1311a GIT binary patch literal 3870 zcma);c{J4h9>;%nil|2-o+rCuEF-(I%-F}ijC~o(k~HKAkr0)!FCj~d>`RtpD?8b; 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HcmV?d00001 diff --git a/app/public/manifest.json b/app/public/manifest.json new file mode 100644 index 00000000..080d6c77 --- /dev/null +++ b/app/public/manifest.json @@ -0,0 +1,25 @@ +{ + "short_name": "React App", + "name": "Create React App Sample", + "icons": [ + { + "src": "favicon.ico", + "sizes": "64x64 32x32 24x24 16x16", + "type": "image/x-icon" + }, + { + "src": "logo192.png", + "type": "image/png", + "sizes": "192x192" + }, + { + "src": "logo512.png", + "type": "image/png", + "sizes": "512x512" + } + ], + "start_url": ".", + "display": "standalone", + "theme_color": "#000000", + "background_color": "#ffffff" +} diff --git a/app/public/robots.txt b/app/public/robots.txt new file mode 100644 index 00000000..e9e57dc4 --- /dev/null +++ b/app/public/robots.txt @@ -0,0 +1,3 @@ +# https://www.robotstxt.org/robotstxt.html +User-agent: * +Disallow: diff --git a/app/src/App.css b/app/src/App.css new file mode 100644 index 00000000..74b5e053 --- /dev/null +++ b/app/src/App.css @@ -0,0 +1,38 @@ +.App { + text-align: center; +} + +.App-logo { + height: 40vmin; + pointer-events: none; +} + +@media (prefers-reduced-motion: no-preference) { + .App-logo { + animation: App-logo-spin infinite 20s linear; + } +} + +.App-header { + background-color: #282c34; + min-height: 100vh; + display: flex; + flex-direction: column; + align-items: center; + justify-content: center; + font-size: calc(10px + 2vmin); + color: white; +} + +.App-link { + color: #61dafb; +} + +@keyframes App-logo-spin { + from { + transform: rotate(0deg); + } + to { + transform: rotate(360deg); + } +} diff --git a/app/src/App.js b/app/src/App.js new file mode 100644 index 00000000..37845757 --- /dev/null +++ b/app/src/App.js @@ -0,0 +1,25 @@ +import logo from './logo.svg'; +import './App.css'; + +function App() { + return ( + + ); +} + +export default App; diff --git a/app/src/App.test.js b/app/src/App.test.js new file mode 100644 index 00000000..1f03afee --- /dev/null +++ b/app/src/App.test.js @@ -0,0 +1,8 @@ +import { render, screen } from '@testing-library/react'; +import App from './App'; + +test('renders learn react link', () => { + render(); + const linkElement = screen.getByText(/learn react/i); + expect(linkElement).toBeInTheDocument(); +}); diff --git a/app/src/index.css b/app/src/index.css new file mode 100644 index 00000000..ec2585e8 --- /dev/null +++ b/app/src/index.css @@ -0,0 +1,13 @@ +body { + margin: 0; + font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', 'Roboto', 'Oxygen', + 'Ubuntu', 'Cantarell', 'Fira Sans', 'Droid Sans', 'Helvetica Neue', + sans-serif; + -webkit-font-smoothing: antialiased; + -moz-osx-font-smoothing: grayscale; +} + +code { + font-family: source-code-pro, Menlo, Monaco, Consolas, 'Courier New', + monospace; +} diff --git a/app/src/index.js b/app/src/index.js new file mode 100644 index 00000000..d563c0fb --- /dev/null +++ b/app/src/index.js @@ -0,0 +1,17 @@ +import React from 'react'; +import ReactDOM from 'react-dom/client'; +import './index.css'; +import App from './App'; +import reportWebVitals from './reportWebVitals'; + +const root = ReactDOM.createRoot(document.getElementById('root')); +root.render( + + + +); + +// If you want to start measuring performance in your app, pass a function +// to log results (for example: reportWebVitals(console.log)) +// or send to an analytics endpoint. Learn more: https://bit.ly/CRA-vitals +reportWebVitals(); diff --git a/app/src/logo.svg b/app/src/logo.svg new file mode 100644 index 00000000..9dfc1c05 --- /dev/null +++ b/app/src/logo.svg @@ -0,0 +1 @@ + \ No newline at end of file diff --git a/app/src/reportWebVitals.js b/app/src/reportWebVitals.js new file mode 100644 index 00000000..5253d3ad --- /dev/null +++ b/app/src/reportWebVitals.js @@ -0,0 +1,13 @@ +const reportWebVitals = onPerfEntry => { + if (onPerfEntry && onPerfEntry instanceof Function) { + import('web-vitals').then(({ getCLS, getFID, getFCP, getLCP, getTTFB }) => { + getCLS(onPerfEntry); + getFID(onPerfEntry); + getFCP(onPerfEntry); + getLCP(onPerfEntry); + getTTFB(onPerfEntry); + }); + } +}; + +export default reportWebVitals; diff --git a/app/src/setupTests.js b/app/src/setupTests.js new file mode 100644 index 00000000..8f2609b7 --- /dev/null +++ b/app/src/setupTests.js @@ -0,0 +1,5 @@ +// jest-dom adds custom jest matchers for asserting on DOM nodes. +// allows you to do things like: +// expect(element).toHaveTextContent(/react/i) +// learn more: https://github.com/testing-library/jest-dom +import '@testing-library/jest-dom'; From 04303a2cad2813d5247e5082379907149ce3b29c Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Wed, 26 Oct 2022 13:17:24 -0400 Subject: [PATCH 002/220] cleanup ./app --- .gitignore | 20 +++++++++++- README.md | 27 ++++++++++++++++ app/.gitignore | 23 -------------- app/README.md | 70 ----------------------------------------- app/public/index.html | 4 +-- app/public/logo192.png | Bin 5347 -> 0 bytes app/public/logo512.png | Bin 9664 -> 0 bytes app/src/App.css | 38 ---------------------- app/src/App.js | 2 -- app/src/logo.svg | 1 - 10 files changed, 48 insertions(+), 137 deletions(-) delete mode 100644 app/.gitignore delete mode 100644 app/README.md delete mode 100644 app/public/logo192.png delete mode 100644 app/public/logo512.png delete mode 100644 app/src/logo.svg diff --git a/.gitignore b/.gitignore index 86d04ee9..6ca579f1 100644 --- a/.gitignore +++ b/.gitignore @@ -13,7 +13,7 @@ __pycache__ # vim swap files *.sw[a-z] # build output -/build +**/build /dist # Folder tracking files .DS_Store @@ -25,3 +25,21 @@ __pycache__ # Node stuff. **/node_modules/ **/package-lock.json + +# React dependencies +**/.pnp +**/.pnp.js + +# testing +**/coverage + +# misc +**/.DS_Store +**/.env.local +**/.env.development.local +**/.env.test.local +**/.env.production.local + +**/npm-debug.log* +**/yarn-debug.log* +**/yarn-error.log* diff --git a/README.md b/README.md index a1d0ad4e..fdc5b412 100644 --- a/README.md +++ b/README.md @@ -31,3 +31,30 @@ $ docker run -d -p 5432:5432 openreactiondatabase/ord-postgres:test # Start the development server. $ POSTGRES_USER=postgres POSTGRES_PASSWORD=postgres FLASK_APP=interface.py FLASK_ENV=development python -m flask run ``` + +## React App + +In the `./app` directory, you can run: + +### `npm start` + +Runs the app in the development mode.\ +Open [http://localhost:3000](http://localhost:3000) to view it in your browser. + +The page will reload when you make changes.\ +You may also see any lint errors in the console. + +### `npm test` + +Launches the test runner in the interactive watch mode.\ +See the section about [running tests](https://facebook.github.io/create-react-app/docs/running-tests) for more information. + +### `npm run build` + +Builds the app for production to the `build` folder.\ +It correctly bundles React in production mode and optimizes the build for the best performance. + +The build is minified and the filenames include the hashes.\ +Your app is ready to be deployed! + +See the section about [deployment](https://facebook.github.io/create-react-app/docs/deployment) for more information. \ No newline at end of file diff --git a/app/.gitignore b/app/.gitignore deleted file mode 100644 index 4d29575d..00000000 --- a/app/.gitignore +++ /dev/null @@ -1,23 +0,0 @@ -# See https://help.github.com/articles/ignoring-files/ for more about ignoring files. - -# dependencies -/node_modules -/.pnp -.pnp.js - -# testing -/coverage - -# production -/build - -# misc -.DS_Store -.env.local -.env.development.local -.env.test.local -.env.production.local - -npm-debug.log* -yarn-debug.log* -yarn-error.log* diff --git a/app/README.md b/app/README.md deleted file mode 100644 index 58beeacc..00000000 --- a/app/README.md +++ /dev/null @@ -1,70 +0,0 @@ -# Getting Started with Create React App - -This project was bootstrapped with [Create React App](https://github.com/facebook/create-react-app). - -## Available Scripts - -In the project directory, you can run: - -### `npm start` - -Runs the app in the development mode.\ -Open [http://localhost:3000](http://localhost:3000) to view it in your browser. - -The page will reload when you make changes.\ -You may also see any lint errors in the console. - -### `npm test` - -Launches the test runner in the interactive watch mode.\ -See the section about [running tests](https://facebook.github.io/create-react-app/docs/running-tests) for more information. - -### `npm run build` - -Builds the app for production to the `build` folder.\ -It correctly bundles React in production mode and optimizes the build for the best performance. - -The build is minified and the filenames include the hashes.\ -Your app is ready to be deployed! - -See the section about [deployment](https://facebook.github.io/create-react-app/docs/deployment) for more information. - -### `npm run eject` - -**Note: this is a one-way operation. Once you `eject`, you can't go back!** - -If you aren't satisfied with the build tool and configuration choices, you can `eject` at any time. This command will remove the single build dependency from your project. - -Instead, it will copy all the configuration files and the transitive dependencies (webpack, Babel, ESLint, etc) right into your project so you have full control over them. All of the commands except `eject` will still work, but they will point to the copied scripts so you can tweak them. At this point you're on your own. - -You don't have to ever use `eject`. The curated feature set is suitable for small and middle deployments, and you shouldn't feel obligated to use this feature. However we understand that this tool wouldn't be useful if you couldn't customize it when you are ready for it. - -## Learn More - -You can learn more in the [Create React App documentation](https://facebook.github.io/create-react-app/docs/getting-started). - -To learn React, check out the [React documentation](https://reactjs.org/). - -### Code Splitting - -This section has moved here: [https://facebook.github.io/create-react-app/docs/code-splitting](https://facebook.github.io/create-react-app/docs/code-splitting) - -### Analyzing the Bundle Size - -This section has moved here: [https://facebook.github.io/create-react-app/docs/analyzing-the-bundle-size](https://facebook.github.io/create-react-app/docs/analyzing-the-bundle-size) - -### Making a Progressive Web App - -This section has moved here: [https://facebook.github.io/create-react-app/docs/making-a-progressive-web-app](https://facebook.github.io/create-react-app/docs/making-a-progressive-web-app) - -### Advanced Configuration - -This section has moved here: [https://facebook.github.io/create-react-app/docs/advanced-configuration](https://facebook.github.io/create-react-app/docs/advanced-configuration) - -### Deployment - -This section has moved here: [https://facebook.github.io/create-react-app/docs/deployment](https://facebook.github.io/create-react-app/docs/deployment) - -### `npm run build` fails to minify - -This section has moved here: [https://facebook.github.io/create-react-app/docs/troubleshooting#npm-run-build-fails-to-minify](https://facebook.github.io/create-react-app/docs/troubleshooting#npm-run-build-fails-to-minify) diff --git a/app/public/index.html b/app/public/index.html index aa069f27..7c03e956 100644 --- a/app/public/index.html +++ b/app/public/index.html @@ -7,7 +7,7 @@ - React App + Open Reaction Database diff --git a/app/public/logo192.png b/app/public/logo192.png deleted file mode 100644 index fc44b0a3796c0e0a64c3d858ca038bd4570465d9..0000000000000000000000000000000000000000 GIT binary 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zYyhRLN^)$c6Ds{f7*FBpE;n5iglx5PkHfWrj3`x^j^t z7ntuV`g!9Xg#^3!x)l*}IW=(Tz3>Y5l4uGaB&lz{GDjm2D5S$CExLT`I1#n^lBH7Y zDgpMag@`iETKAI=p<5E#LTkwzVR@=yY|uBVI1HG|8h+d;G-qfuj}-ZR6fN>EfCCW z9~wRQoAPEa#aO?3h?x{YvV*d+NtPkf&4V0k4|L=uj!U{L+oLa(z#&iuhJr3-PjO3R z5s?=nn_5^*^Rawr>>Nr@K(jwkB#JK-=+HqwfdO<+P5byeim)wvqGlP-P|~Nse8=XF zz`?RYB|D6SwS}C+YQv+;}k6$-%D(@+t14BL@vM z2q%q?f6D-A5s$_WY3{^G0F131bbh|g!}#BKw=HQ7mx;Dzg4Z*bTLQSfo{ed{4}NZW zfrRm^Ca$rlE{Ue~uYv>R9{3smwATcdM_6+yWIO z*ZRH~uXE@#p$XTbCt5j7j2=86e{9>HIB6xDzV+vAo&B?KUiMP|ttOElepnl%|DPqL b{|{}U^kRn2wo}j7|0ATu<;8xA7zX}7|B6mN diff --git a/app/src/App.css b/app/src/App.css index 74b5e053..e69de29b 100644 --- a/app/src/App.css +++ b/app/src/App.css @@ -1,38 +0,0 @@ -.App { - text-align: center; -} - -.App-logo { - height: 40vmin; - pointer-events: none; -} - -@media (prefers-reduced-motion: no-preference) { - .App-logo { - animation: App-logo-spin infinite 20s linear; - } -} - -.App-header { - background-color: #282c34; - min-height: 100vh; - display: flex; - flex-direction: column; - align-items: center; - justify-content: center; - font-size: calc(10px + 2vmin); - color: white; -} - -.App-link { - color: #61dafb; -} - -@keyframes App-logo-spin { - from { - transform: rotate(0deg); - } - to { - transform: rotate(360deg); - } -} diff --git a/app/src/App.js b/app/src/App.js index 37845757..2e45f7cf 100644 --- a/app/src/App.js +++ b/app/src/App.js @@ -1,11 +1,9 @@ -import logo from './logo.svg'; import './App.css'; function App() { return (
- logo

Edit src/App.js and save to reload.

diff --git a/app/src/logo.svg b/app/src/logo.svg deleted file mode 100644 index 9dfc1c05..00000000 --- a/app/src/logo.svg +++ /dev/null @@ -1 +0,0 @@ - \ No newline at end of file From 257d5938cfa7f7bd741cd3ca3ebe4382f723bfd8 Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Wed, 26 Oct 2022 13:26:10 -0400 Subject: [PATCH 003/220] scaffolding react router --- app/public/index.html | 3 ++- app/src/App.js | 34 +++++++++++++++++++--------------- package.json | 5 +++++ 3 files changed, 26 insertions(+), 16 deletions(-) create mode 100644 package.json diff --git a/app/public/index.html b/app/public/index.html index 7c03e956..2dd61515 100644 --- a/app/public/index.html +++ b/app/public/index.html @@ -2,7 +2,8 @@ - + + -
-

- Edit src/App.js and save to reload. -

- - Learn React - -
-
+ +
+ + + + + + + + + + + + + + +
+ ); } diff --git a/package.json b/package.json new file mode 100644 index 00000000..09537892 --- /dev/null +++ b/package.json @@ -0,0 +1,5 @@ +{ + "dependencies": { + "react-router-dom": "^6.4.2" + } +} From 304fa0099afd3d9f406b74bdc256326ac4e8784a Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Wed, 26 Oct 2022 14:50:46 -0400 Subject: [PATCH 004/220] beginning of routing browse page --- app/package.json | 1 + app/public/index.html | 23 +++++++++++++++++++ app/src/App.js | 37 +++++++++++++++++++----------- app/src/components/Footer.js | 11 +++++++++ app/src/components/Nav.js | 43 +++++++++++++++++++++++++++++++++++ app/src/pages/Browse/index.js | 16 +++++++++++++ app/src/pages/Home.js | 0 7 files changed, 118 insertions(+), 13 deletions(-) create mode 100644 app/src/components/Footer.js create mode 100644 app/src/components/Nav.js create mode 100644 app/src/pages/Browse/index.js create mode 100644 app/src/pages/Home.js diff --git a/app/package.json b/app/package.json index 953f26d7..cd7a3a12 100644 --- a/app/package.json +++ b/app/package.json @@ -8,6 +8,7 @@ "@testing-library/user-event": "^13.5.0", "react": "^18.2.0", "react-dom": "^18.2.0", + "react-router-dom": "^6.4.2", "react-scripts": "5.0.1", "web-vitals": "^2.1.4" }, diff --git a/app/public/index.html b/app/public/index.html index 2dd61515..ae2cf2f3 100644 --- a/app/public/index.html +++ b/app/public/index.html @@ -26,6 +26,29 @@ Learn how to configure a non-root public URL by running `npm run build`. --> Open Reaction Database + + + + + + + + + + diff --git a/app/src/App.js b/app/src/App.js index 0caeaf32..e05ccb4f 100644 --- a/app/src/App.js +++ b/app/src/App.js @@ -1,24 +1,35 @@ import './App.css'; -import { BrowserRouter as Router, Routes, Route, Link } from "react-router-dom" +import { BrowserRouter as Router, Routes, Route } from "react-router-dom" +import { Nav } from "./components/Nav" +import { Footer } from "./components/Footer" +// routes +import { Browse } from "./pages/Browse/index" function App() { return (
+
); diff --git a/app/src/components/Footer.js b/app/src/components/Footer.js new file mode 100644 index 00000000..2bd3b8d5 --- /dev/null +++ b/app/src/components/Footer.js @@ -0,0 +1,11 @@ + +export function Footer() { + return ( + // https://radu.link/make-footer-stay-bottom-page-bootstrap/ +
+
+ © Copyright 2022 Open Reaction Database Project Authors +
+
+ ) +} \ No newline at end of file diff --git a/app/src/components/Nav.js b/app/src/components/Nav.js new file mode 100644 index 00000000..c0e1631c --- /dev/null +++ b/app/src/components/Nav.js @@ -0,0 +1,43 @@ +import { Link } from "react-router-dom" + +export function Nav() { + return ( + + ) +} \ No newline at end of file diff --git a/app/src/pages/Browse/index.js b/app/src/pages/Browse/index.js new file mode 100644 index 00000000..84d39cce --- /dev/null +++ b/app/src/pages/Browse/index.js @@ -0,0 +1,16 @@ +export function Browse() { + return ( +
+ + + + + + + + + +
Dataset IDNameDescriptionSize
+
+ ) +} diff --git a/app/src/pages/Home.js b/app/src/pages/Home.js new file mode 100644 index 00000000..e69de29b From 4f818de8ffe236fa4fb949814ff03705b1f2b0fa Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Wed, 26 Oct 2022 14:55:41 -0400 Subject: [PATCH 005/220] better formatting --- app/src/App.js | 6 +++--- app/src/components/Footer.js | 6 ++++-- app/src/components/Nav.js | 6 ++++-- app/src/pages/Browse/index.js | 4 +++- 4 files changed, 14 insertions(+), 8 deletions(-) diff --git a/app/src/App.js b/app/src/App.js index e05ccb4f..3d2dc562 100644 --- a/app/src/App.js +++ b/app/src/App.js @@ -1,9 +1,9 @@ import './App.css'; import { BrowserRouter as Router, Routes, Route } from "react-router-dom" -import { Nav } from "./components/Nav" -import { Footer } from "./components/Footer" +import Nav from "./components/Nav" +import Footer from "./components/Footer" // routes -import { Browse } from "./pages/Browse/index" +import Browse from "./pages/Browse/index" function App() { return ( diff --git a/app/src/components/Footer.js b/app/src/components/Footer.js index 2bd3b8d5..4890f71b 100644 --- a/app/src/components/Footer.js +++ b/app/src/components/Footer.js @@ -1,5 +1,5 @@ -export function Footer() { +const Footer = () => { return ( // https://radu.link/make-footer-stay-bottom-page-bootstrap/
@@ -8,4 +8,6 @@ export function Footer() {
) -} \ No newline at end of file +} + +export default Footer \ No newline at end of file diff --git a/app/src/components/Nav.js b/app/src/components/Nav.js index c0e1631c..a2ea2c0b 100644 --- a/app/src/components/Nav.js +++ b/app/src/components/Nav.js @@ -1,6 +1,6 @@ import { Link } from "react-router-dom" -export function Nav() { +const Nav = () => { return ( ) -} \ No newline at end of file +} + +export default Nav \ No newline at end of file diff --git a/app/src/pages/Browse/index.js b/app/src/pages/Browse/index.js index 84d39cce..5bc74186 100644 --- a/app/src/pages/Browse/index.js +++ b/app/src/pages/Browse/index.js @@ -1,4 +1,4 @@ -export function Browse() { +const Browse = () => { return (
@@ -14,3 +14,5 @@ export function Browse() { ) } + +export default Browse \ No newline at end of file From 50aaf66d22c289b2c58da9917adbed4d7b63e583 Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Wed, 26 Oct 2022 14:58:30 -0400 Subject: [PATCH 006/220] class to className because React is picky --- app/public/manifest.json | 38 +++++++++++++++++------------------ app/src/components/Footer.js | 4 ++-- app/src/components/Nav.js | 30 +++++++++++++-------------- app/src/pages/Browse/index.js | 7 +++++-- 4 files changed, 41 insertions(+), 38 deletions(-) diff --git a/app/public/manifest.json b/app/public/manifest.json index 080d6c77..838fc40c 100644 --- a/app/public/manifest.json +++ b/app/public/manifest.json @@ -1,23 +1,23 @@ { - "short_name": "React App", - "name": "Create React App Sample", - "icons": [ - { - "src": "favicon.ico", - "sizes": "64x64 32x32 24x24 16x16", - "type": "image/x-icon" - }, - { - "src": "logo192.png", - "type": "image/png", - "sizes": "192x192" - }, - { - "src": "logo512.png", - "type": "image/png", - "sizes": "512x512" - } - ], + "short_name": "ORD", + "name": "Open Reaction Database", + // "icons": [ + // { + // "src": "favicon.ico", + // "sizes": "64x64 32x32 24x24 16x16", + // "type": "image/x-icon" + // }, + // { + // "src": "logo192.png", + // "type": "image/png", + // "sizes": "192x192" + // }, + // { + // "src": "logo512.png", + // "type": "image/png", + // "sizes": "512x512" + // } + // ], "start_url": ".", "display": "standalone", "theme_color": "#000000", diff --git a/app/src/components/Footer.js b/app/src/components/Footer.js index 4890f71b..02284281 100644 --- a/app/src/components/Footer.js +++ b/app/src/components/Footer.js @@ -2,8 +2,8 @@ const Footer = () => { return ( // https://radu.link/make-footer-stay-bottom-page-bootstrap/ -
-
+
+
© Copyright 2022 Open Reaction Database Project Authors
diff --git a/app/src/components/Nav.js b/app/src/components/Nav.js index a2ea2c0b..791f0144 100644 --- a/app/src/components/Nav.js +++ b/app/src/components/Nav.js @@ -2,16 +2,16 @@ import { Link } from "react-router-dom" const Nav = () => { return ( -
+
+
From e57031b5b79c41e2b030b34443491afec78fa513 Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Fri, 28 Oct 2022 15:21:16 -0400 Subject: [PATCH 007/220] initial fetch request --- README.md | 3 +++ app/src/pages/Browse/index.js | 9 +++++++++ 2 files changed, 12 insertions(+) diff --git a/README.md b/README.md index fdc5b412..c20dd9ee 100644 --- a/README.md +++ b/README.md @@ -34,6 +34,9 @@ $ POSTGRES_USER=postgres POSTGRES_PASSWORD=postgres FLASK_APP=interface.py FLASK ## React App +```shell +cd app +``` In the `./app` directory, you can run: ### `npm start` diff --git a/app/src/pages/Browse/index.js b/app/src/pages/Browse/index.js index 8baddf6f..762a1ba2 100644 --- a/app/src/pages/Browse/index.js +++ b/app/src/pages/Browse/index.js @@ -1,6 +1,15 @@ +import { useEffect } from 'react' const Browse = () => { + useEffect(() => { + const tableData = []; + console.log('hello') + fetch("http://localhost:5000/") + .then(response => response.json()) + .then(data => console.log('data',data)) + return + }, []) return (
From 1d329e84cf78538a0e45284d1acb9df7a87ee416 Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Fri, 28 Oct 2022 16:44:24 -0400 Subject: [PATCH 008/220] successfully pulling data from ord api --- ord_interface/client/search.py | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/ord_interface/client/search.py b/ord_interface/client/search.py index ff03739b..92cbae56 100644 --- a/ord_interface/client/search.py +++ b/ord_interface/client/search.py @@ -150,7 +150,8 @@ def fetch_reactions(): return flask.abort(flask.make_response(str(error), 400)) -def fetch_datasets() -> List[Dict[str, Union[str, int]]]: +@bp.route("/api/fetch_datasets", methods=["GET"]) +def fetch_datasets(): """Fetches info about the current datasets.""" engine = connect() rows = {} @@ -173,8 +174,7 @@ def fetch_datasets() -> List[Dict[str, Union[str, int]]]: ) for dataset_id, count in cursor: rows[dataset_id]["Size"] = count - return list(rows.values()) - + return flask.jsonify(list(rows.values())) @bp.route("/api/query") def run_query(): From e796a6ee661cf8c5be346305f612f3f0df17e4e2 Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Thu, 3 Nov 2022 13:23:12 -0400 Subject: [PATCH 009/220] vue set up --- app/.browserslistrc | 4 ++ app/.eslintrc.js | 17 +++++++ app/.gitignore | 23 ++++++++++ app/README.md | 24 ++++++++++ app/babel.config.js | 5 +++ app/jsconfig.json | 19 ++++++++ app/package.json | 50 +++++++++------------ app/public/favicon.ico | Bin 3870 -> 4286 bytes app/public/index.html | 72 +++++------------------------- app/public/manifest.json | 25 ----------- app/public/robots.txt | 3 -- app/src/App.css | 0 app/src/App.js | 38 ---------------- app/src/App.test.js | 8 ---- app/src/App.vue | 30 +++++++++++++ app/src/assets/logo.png | Bin 0 -> 6849 bytes app/src/components/Footer.js | 13 ------ app/src/components/HelloWorld.vue | 59 ++++++++++++++++++++++++ app/src/components/Nav.js | 45 ------------------- app/src/index.css | 13 ------ app/src/index.js | 17 ------- app/src/main.js | 5 +++ app/src/pages/Browse/index.js | 30 ------------- app/src/pages/Home.js | 0 app/src/reportWebVitals.js | 13 ------ app/src/router/index.js | 25 +++++++++++ app/src/setupTests.js | 5 --- app/src/views/AboutView.vue | 5 +++ app/src/views/HomeView.vue | 21 +++++++++ app/vue.config.js | 4 ++ app/webpag.config.js | 4 ++ 31 files changed, 276 insertions(+), 301 deletions(-) create mode 100644 app/.browserslistrc create mode 100644 app/.eslintrc.js create mode 100644 app/.gitignore create mode 100644 app/README.md create mode 100644 app/babel.config.js create mode 100644 app/jsconfig.json delete mode 100644 app/public/manifest.json delete mode 100644 app/public/robots.txt delete mode 100644 app/src/App.css delete mode 100644 app/src/App.js delete mode 100644 app/src/App.test.js create mode 100644 app/src/App.vue create mode 100644 app/src/assets/logo.png delete mode 100644 app/src/components/Footer.js create mode 100644 app/src/components/HelloWorld.vue delete mode 100644 app/src/components/Nav.js delete mode 100644 app/src/index.css delete mode 100644 app/src/index.js create mode 100644 app/src/main.js delete mode 100644 app/src/pages/Browse/index.js delete mode 100644 app/src/pages/Home.js delete mode 100644 app/src/reportWebVitals.js create mode 100644 app/src/router/index.js delete mode 100644 app/src/setupTests.js create mode 100644 app/src/views/AboutView.vue create mode 100644 app/src/views/HomeView.vue create mode 100644 app/vue.config.js create mode 100644 app/webpag.config.js diff --git a/app/.browserslistrc b/app/.browserslistrc new file mode 100644 index 00000000..dc3bc09a --- /dev/null +++ b/app/.browserslistrc @@ -0,0 +1,4 @@ +> 1% +last 2 versions +not dead +not ie 11 diff --git a/app/.eslintrc.js b/app/.eslintrc.js new file mode 100644 index 00000000..7fdf1ba9 --- /dev/null +++ b/app/.eslintrc.js @@ -0,0 +1,17 @@ +module.exports = { + root: true, + env: { + node: true + }, + 'extends': [ + 'plugin:vue/vue3-essential', + 'eslint:recommended' + ], + parserOptions: { + parser: '@babel/eslint-parser' + }, + rules: { + 'no-console': process.env.NODE_ENV === 'production' ? 'warn' : 'off', + 'no-debugger': process.env.NODE_ENV === 'production' ? 'warn' : 'off' + } +} diff --git a/app/.gitignore b/app/.gitignore new file mode 100644 index 00000000..403adbc1 --- /dev/null +++ b/app/.gitignore @@ -0,0 +1,23 @@ +.DS_Store +node_modules +/dist + + +# local env files +.env.local +.env.*.local + +# Log files +npm-debug.log* +yarn-debug.log* +yarn-error.log* +pnpm-debug.log* + +# Editor directories and files +.idea +.vscode +*.suo +*.ntvs* +*.njsproj +*.sln +*.sw? diff --git a/app/README.md b/app/README.md new file mode 100644 index 00000000..e0d1daf1 --- /dev/null +++ b/app/README.md @@ -0,0 +1,24 @@ +# app + +## Project setup +``` +npm install +``` + +### Compiles and hot-reloads for development +``` +npm run serve +``` + +### Compiles and minifies for production +``` +npm run build +``` + +### Lints and fixes files +``` +npm run lint +``` + +### Customize configuration +See [Configuration Reference](https://cli.vuejs.org/config/). diff --git a/app/babel.config.js b/app/babel.config.js new file mode 100644 index 00000000..e9558405 --- /dev/null +++ b/app/babel.config.js @@ -0,0 +1,5 @@ +module.exports = { + presets: [ + '@vue/cli-plugin-babel/preset' + ] +} diff --git a/app/jsconfig.json b/app/jsconfig.json new file mode 100644 index 00000000..4aafc5f6 --- /dev/null +++ b/app/jsconfig.json @@ -0,0 +1,19 @@ +{ + "compilerOptions": { + "target": "es5", + "module": "esnext", + "baseUrl": "./", + "moduleResolution": "node", + "paths": { + "@/*": [ + "src/*" + ] + }, + "lib": [ + "esnext", + "dom", + "dom.iterable", + "scripthost" + ] + } +} diff --git a/app/package.json b/app/package.json index cd7a3a12..42856ac2 100644 --- a/app/package.json +++ b/app/package.json @@ -2,38 +2,28 @@ "name": "app", "version": "0.1.0", "private": true, - "dependencies": { - "@testing-library/jest-dom": "^5.16.5", - "@testing-library/react": "^13.4.0", - "@testing-library/user-event": "^13.5.0", - "react": "^18.2.0", - "react-dom": "^18.2.0", - "react-router-dom": "^6.4.2", - "react-scripts": "5.0.1", - "web-vitals": "^2.1.4" - }, "scripts": { - "start": "react-scripts start", - "build": "react-scripts build", - "test": "react-scripts test", - "eject": "react-scripts eject" + "serve": "vue-cli-service serve", + "build": "vue-cli-service build", + "lint": "vue-cli-service lint" }, - "eslintConfig": { - "extends": [ - "react-app", - "react-app/jest" - ] + "dependencies": { + "core-js": "^3.8.3", + "vue": "^3.2.13", + "vue-router": "^4.0.3" }, - "browserslist": { - "production": [ - ">0.2%", - "not dead", - "not op_mini all" - ], - "development": [ - "last 1 chrome version", - "last 1 firefox version", - "last 1 safari version" - ] + "devDependencies": { + "@babel/core": "^7.12.16", + "@babel/eslint-parser": "^7.12.16", + "@vue/cli-plugin-babel": "~5.0.0", + "@vue/cli-plugin-eslint": "~5.0.0", + "@vue/cli-plugin-router": "~5.0.0", + "@vue/cli-service": "~5.0.0", + "eslint": "^7.32.0", + "eslint-plugin-vue": "^8.0.3", + "pug": "^3.0.2", + "pug-plain-loader": "^1.1.0", + "sass": "^1.32.7", + "sass-loader": "^12.0.0" } } diff --git a/app/public/favicon.ico b/app/public/favicon.ico index a11777cc471a4344702741ab1c8a588998b1311a..df36fcfb72584e00488330b560ebcf34a41c64c2 100644 GIT binary patch literal 4286 zcmds*O-Phc6o&64GDVCEQHxsW(p4>LW*W<827=Unuo8sGpRux(DN@jWP-e29Wl%wj zY84_aq9}^Am9-cWTD5GGEo#+5Fi2wX_P*bo+xO!)p*7B;iKlbFd(U~_d(U?#hLj56 zPhFkj-|A6~Qk#@g^#D^U0XT1cu=c-vu1+SElX9NR;kzAUV(q0|dl0|%h|dI$%VICy zJnu2^L*Te9JrJMGh%-P79CL0}dq92RGU6gI{v2~|)p}sG5x0U*z<8U;Ij*hB9z?ei z@g6Xq-pDoPl=MANPiR7%172VA%r)kevtV-_5H*QJKFmd;8yA$98zCxBZYXTNZ#QFk2(TX0;Y2dt&WitL#$96|gJY=3xX zpCoi|YNzgO3R`f@IiEeSmKrPSf#h#Qd<$%Ej^RIeeYfsxhPMOG`S`Pz8q``=511zm zAm)MX5AV^5xIWPyEu7u>qYs?pn$I4nL9J!=K=SGlKLXpE<5x+2cDTXq?brj?n6sp= zphe9;_JHf40^9~}9i08r{XM$7HB!`{Ys~TK0kx<}ZQng`UPvH*11|q7&l9?@FQz;8 zx!=3<4seY*%=OlbCbcae?5^V_}*K>Uo6ZWV8mTyE^B=DKy7-sdLYkR5Z?paTgK-zyIkKjIcpyO z{+uIt&YSa_$QnN_@t~L014dyK(fOOo+W*MIxbA6Ndgr=Y!f#Tokqv}n<7-9qfHkc3 z=>a|HWqcX8fzQCT=dqVbogRq!-S>H%yA{1w#2Pn;=e>JiEj7Hl;zdt-2f+j2%DeVD zsW0Ab)ZK@0cIW%W7z}H{&~yGhn~D;aiP4=;m-HCo`BEI+Kd6 z={Xwx{TKxD#iCLfl2vQGDitKtN>z|-AdCN|$jTFDg0m3O`WLD4_s#$S literal 3870 zcma);c{J4h9>;%nil|2-o+rCuEF-(I%-F}ijC~o(k~HKAkr0)!FCj~d>`RtpD?8b; 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- + +
+ diff --git a/app/public/manifest.json b/app/public/manifest.json deleted file mode 100644 index 838fc40c..00000000 --- a/app/public/manifest.json +++ /dev/null @@ -1,25 +0,0 @@ -{ - "short_name": "ORD", - "name": "Open Reaction Database", - // "icons": [ - // { - // "src": "favicon.ico", - // "sizes": "64x64 32x32 24x24 16x16", - // "type": "image/x-icon" - // }, - // { - // "src": "logo192.png", - // "type": "image/png", - // "sizes": "192x192" - // }, - // { - // "src": "logo512.png", - // "type": "image/png", - // "sizes": "512x512" - // } - // ], - "start_url": ".", - "display": "standalone", - "theme_color": "#000000", - "background_color": "#ffffff" -} diff --git a/app/public/robots.txt b/app/public/robots.txt deleted file mode 100644 index e9e57dc4..00000000 --- a/app/public/robots.txt +++ /dev/null @@ -1,3 +0,0 @@ -# https://www.robotstxt.org/robotstxt.html -User-agent: * -Disallow: diff --git a/app/src/App.css b/app/src/App.css deleted file mode 100644 index e69de29b..00000000 diff --git a/app/src/App.js b/app/src/App.js deleted file mode 100644 index 3d2dc562..00000000 --- a/app/src/App.js +++ /dev/null @@ -1,38 +0,0 @@ -import './App.css'; -import { BrowserRouter as Router, Routes, Route } from "react-router-dom" -import Nav from "./components/Nav" -import Footer from "./components/Footer" -// routes -import Browse from "./pages/Browse/index" - -function App() { - return ( - -
-
- - ); -} - -export default App; diff --git a/app/src/App.test.js b/app/src/App.test.js deleted file mode 100644 index 1f03afee..00000000 --- a/app/src/App.test.js +++ /dev/null @@ -1,8 +0,0 @@ -import { render, screen } from '@testing-library/react'; -import App from './App'; - -test('renders learn react link', () => { - render(); - const linkElement = screen.getByText(/learn react/i); - expect(linkElement).toBeInTheDocument(); -}); diff --git a/app/src/App.vue b/app/src/App.vue new file mode 100644 index 00000000..ec98c47b --- /dev/null +++ b/app/src/App.vue @@ -0,0 +1,30 @@ + + + diff --git a/app/src/assets/logo.png b/app/src/assets/logo.png new file mode 100644 index 0000000000000000000000000000000000000000..f3d2503fc2a44b5053b0837ebea6e87a2d339a43 GIT binary patch literal 6849 zcmaKRcUV(fvo}bjDT-7nLI_nlK}sT_69H+`qzVWDA|yaU?}j417wLi^B1KB1SLsC& zL0ag7$U(XW5YR7p&Ux?sP$d4lvMt8C^+TcQu4F zQqv!UF!I+kw)c0jhd6+g6oCr9P?7)?!qX1ui*iL{p}sKCAGuJ{{W)0z1pLF|=>h}& zt(2Lr0Z`2ig8<5i%Zk}cO5Fm=LByqGWaS`oqChZdEFmc`0hSb#gg|Aap^{+WKOYcj zHjINK)KDG%&s?Mt4CL(T=?;~U@bU2x_mLKN!#GJuK_CzbNw5SMEJorG!}_5;?R>@1 zSl)jns3WlU7^J%=(hUtfmuUCU&C3%8B5C^f5>W2Cy8jW3#{Od{lF1}|?c61##3dzA zsPlFG;l_FzBK}8>|H_Ru_H#!_7$UH4UKo3lKOA}g1(R&|e@}GINYVzX?q=_WLZCgh z)L|eJMce`D0EIwgRaNETDsr+?vQknSGAi=7H00r`QnI%oQnFxm`G2umXso9l+8*&Q z7WqF|$p49js$mdzo^BXpH#gURy=UO;=IMrYc5?@+sR4y_?d*~0^YP7d+y0{}0)zBM zIKVM(DBvICK#~7N0a+PY6)7;u=dutmNqK3AlsrUU9U`d;msiucB_|8|2kY=(7XA;G zwDA8AR)VCA#JOkxm#6oHNS^YVuOU;8p$N)2{`;oF|rQ?B~K$%rHDxXs+_G zF5|-uqHZvSzq}L;5Kcy_P+x0${33}Ofb6+TX&=y;;PkEOpz%+_bCw_{<&~ zeLV|!bP%l1qxywfVr9Z9JI+++EO^x>ZuCK);=$VIG1`kxK8F2M8AdC$iOe3cj1fo(ce4l-9 z7*zKy3={MixvUk=enQE;ED~7tv%qh&3lR<0m??@w{ILF|e#QOyPkFYK!&Up7xWNtL zOW%1QMC<3o;G9_S1;NkPB6bqbCOjeztEc6TsBM<(q9((JKiH{01+Ud=uw9B@{;(JJ z-DxI2*{pMq`q1RQc;V8@gYAY44Z!%#W~M9pRxI(R?SJ7sy7em=Z5DbuDlr@*q|25V)($-f}9c#?D%dU^RS<(wz?{P zFFHtCab*!rl(~j@0(Nadvwg8q|4!}L^>d?0al6}Rrv9$0M#^&@zjbfJy_n!%mVHK4 z6pLRIQ^Uq~dnyy$`ay51Us6WaP%&O;@49m&{G3z7xV3dLtt1VTOMYl3UW~Rm{Eq4m zF?Zl_v;?7EFx1_+#WFUXxcK78IV)FO>42@cm@}2I%pVbZqQ}3;p;sDIm&knay03a^ zn$5}Q$G!@fTwD$e(x-~aWP0h+4NRz$KlnO_H2c< z(XX#lPuW_%H#Q+c&(nRyX1-IadKR-%$4FYC0fsCmL9ky3 zKpxyjd^JFR+vg2!=HWf}2Z?@Td`0EG`kU?{8zKrvtsm)|7>pPk9nu@2^z96aU2<#` z2QhvH5w&V;wER?mopu+nqu*n8p~(%QkwSs&*0eJwa zMXR05`OSFpfyRb!Y_+H@O%Y z0=K^y6B8Gcbl?SA)qMP3Z+=C(?8zL@=74R=EVnE?vY!1BQy2@q*RUgRx4yJ$k}MnL zs!?74QciNb-LcG*&o<9=DSL>1n}ZNd)w1z3-0Pd^4ED1{qd=9|!!N?xnXjM!EuylY z5=!H>&hSofh8V?Jofyd!h`xDI1fYAuV(sZwwN~{$a}MX^=+0TH*SFp$vyxmUv7C*W zv^3Gl0+eTFgBi3FVD;$nhcp)ka*4gSskYIqQ&+M}xP9yLAkWzBI^I%zR^l1e?bW_6 zIn{mo{dD=)9@V?s^fa55jh78rP*Ze<3`tRCN4*mpO$@7a^*2B*7N_|A(Ve2VB|)_o z$=#_=aBkhe(ifX}MLT()@5?OV+~7cXC3r!%{QJxriXo9I%*3q4KT4Xxzyd{ z9;_%=W%q!Vw$Z7F3lUnY+1HZ*lO;4;VR2+i4+D(m#01OYq|L_fbnT;KN<^dkkCwtd zF7n+O7KvAw8c`JUh6LmeIrk4`F3o|AagKSMK3))_5Cv~y2Bb2!Ibg9BO7Vkz?pAYX zoI=B}+$R22&IL`NCYUYjrdhwjnMx_v=-Qcx-jmtN>!Zqf|n1^SWrHy zK|MwJ?Z#^>)rfT5YSY{qjZ&`Fjd;^vv&gF-Yj6$9-Dy$<6zeP4s+78gS2|t%Z309b z0^fp~ue_}i`U9j!<|qF92_3oB09NqgAoehQ`)<)dSfKoJl_A6Ec#*Mx9Cpd-p#$Ez z={AM*r-bQs6*z$!*VA4|QE7bf@-4vb?Q+pPKLkY2{yKsw{&udv_2v8{Dbd zm~8VAv!G~s)`O3|Q6vFUV%8%+?ZSVUa(;fhPNg#vab@J*9XE4#D%)$UU-T5`fwjz! 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-
- © Copyright 2022 Open Reaction Database Project Authors -
-
- ) -} - -export default Footer \ No newline at end of file diff --git a/app/src/components/HelloWorld.vue b/app/src/components/HelloWorld.vue new file mode 100644 index 00000000..ede82ae0 --- /dev/null +++ b/app/src/components/HelloWorld.vue @@ -0,0 +1,59 @@ + + + + + + diff --git a/app/src/components/Nav.js b/app/src/components/Nav.js deleted file mode 100644 index 791f0144..00000000 --- a/app/src/components/Nav.js +++ /dev/null @@ -1,45 +0,0 @@ -import { Link } from "react-router-dom" - -const Nav = () => { - return ( - - ) -} - -export default Nav \ No newline at end of file diff --git a/app/src/index.css b/app/src/index.css deleted file mode 100644 index ec2585e8..00000000 --- a/app/src/index.css +++ /dev/null @@ -1,13 +0,0 @@ -body { - margin: 0; - font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', 'Roboto', 'Oxygen', - 'Ubuntu', 'Cantarell', 'Fira Sans', 'Droid Sans', 'Helvetica Neue', - sans-serif; - -webkit-font-smoothing: antialiased; - -moz-osx-font-smoothing: grayscale; -} - -code { - font-family: source-code-pro, Menlo, Monaco, Consolas, 'Courier New', - monospace; -} diff --git a/app/src/index.js b/app/src/index.js deleted file mode 100644 index d563c0fb..00000000 --- a/app/src/index.js +++ /dev/null @@ -1,17 +0,0 @@ -import React from 'react'; -import ReactDOM from 'react-dom/client'; -import './index.css'; -import App from './App'; -import reportWebVitals from './reportWebVitals'; - -const root = ReactDOM.createRoot(document.getElementById('root')); -root.render( - - - -); - -// If you want to start measuring performance in your app, pass a function -// to log results (for example: reportWebVitals(console.log)) -// or send to an analytics endpoint. Learn more: https://bit.ly/CRA-vitals -reportWebVitals(); diff --git a/app/src/main.js b/app/src/main.js new file mode 100644 index 00000000..3e79677c --- /dev/null +++ b/app/src/main.js @@ -0,0 +1,5 @@ +import { createApp } from 'vue' +import App from './App.vue' +import router from './router' + +createApp(App).use(router).mount('#app') diff --git a/app/src/pages/Browse/index.js b/app/src/pages/Browse/index.js deleted file mode 100644 index 762a1ba2..00000000 --- a/app/src/pages/Browse/index.js +++ /dev/null @@ -1,30 +0,0 @@ -import { useEffect } from 'react' - -const Browse = () => { - - useEffect(() => { - const tableData = []; - console.log('hello') - fetch("http://localhost:5000/") - .then(response => response.json()) - .then(data => console.log('data',data)) - return - }, []) - - return ( -
-
Dataset ID
- - - - - - - - -
Dataset IDNameDescriptionSize
-
- ) -} - -export default Browse \ No newline at end of file diff --git a/app/src/pages/Home.js b/app/src/pages/Home.js deleted file mode 100644 index e69de29b..00000000 diff --git a/app/src/reportWebVitals.js b/app/src/reportWebVitals.js deleted file mode 100644 index 5253d3ad..00000000 --- a/app/src/reportWebVitals.js +++ /dev/null @@ -1,13 +0,0 @@ -const reportWebVitals = onPerfEntry => { - if (onPerfEntry && onPerfEntry instanceof Function) { - import('web-vitals').then(({ getCLS, getFID, getFCP, getLCP, getTTFB }) => { - getCLS(onPerfEntry); - getFID(onPerfEntry); - getFCP(onPerfEntry); - getLCP(onPerfEntry); - getTTFB(onPerfEntry); - }); - } -}; - -export default reportWebVitals; diff --git a/app/src/router/index.js b/app/src/router/index.js new file mode 100644 index 00000000..d3a856ef --- /dev/null +++ b/app/src/router/index.js @@ -0,0 +1,25 @@ +import { createRouter, createWebHistory } from 'vue-router' +import HomeView from '../views/HomeView.vue' + +const routes = [ + { + path: '/', + name: 'home', + component: HomeView + }, + { + path: '/about', + name: 'about', + // route level code-splitting + // this generates a separate chunk (about.[hash].js) for this route + // which is lazy-loaded when the route is visited. + component: () => import(/* webpackChunkName: "about" */ '../views/AboutView.vue') + } +] + +const router = createRouter({ + history: createWebHistory(process.env.BASE_URL), + routes +}) + +export default router diff --git a/app/src/setupTests.js b/app/src/setupTests.js deleted file mode 100644 index 8f2609b7..00000000 --- a/app/src/setupTests.js +++ /dev/null @@ -1,5 +0,0 @@ -// jest-dom adds custom jest matchers for asserting on DOM nodes. -// allows you to do things like: -// expect(element).toHaveTextContent(/react/i) -// learn more: https://github.com/testing-library/jest-dom -import '@testing-library/jest-dom'; diff --git a/app/src/views/AboutView.vue b/app/src/views/AboutView.vue new file mode 100644 index 00000000..3fa28070 --- /dev/null +++ b/app/src/views/AboutView.vue @@ -0,0 +1,5 @@ + diff --git a/app/src/views/HomeView.vue b/app/src/views/HomeView.vue new file mode 100644 index 00000000..81a410b2 --- /dev/null +++ b/app/src/views/HomeView.vue @@ -0,0 +1,21 @@ + + + + + \ No newline at end of file diff --git a/app/vue.config.js b/app/vue.config.js new file mode 100644 index 00000000..910e297e --- /dev/null +++ b/app/vue.config.js @@ -0,0 +1,4 @@ +const { defineConfig } = require('@vue/cli-service') +module.exports = defineConfig({ + transpileDependencies: true +}) diff --git a/app/webpag.config.js b/app/webpag.config.js new file mode 100644 index 00000000..544571ae --- /dev/null +++ b/app/webpag.config.js @@ -0,0 +1,4 @@ +module.rules = { + test: /\.pug$/, + loader: 'pug-plain-loader' +} \ No newline at end of file From 98c0f92527b9d3752405bb4faac8af6ee44566bc Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Thu, 3 Nov 2022 13:40:57 -0400 Subject: [PATCH 010/220] reverse proxying to api --- app-react/package.json | 40 +++++++++++++++++ app-react/public/favicon.ico | Bin 0 -> 3870 bytes app-react/public/index.html | 67 ++++++++++++++++++++++++++++ app-react/public/manifest.json | 25 +++++++++++ app-react/public/robots.txt | 3 ++ app-react/src/App.js | 37 +++++++++++++++ app-react/src/App.test.js | 8 ++++ app-react/src/components/Footer.js | 13 ++++++ app-react/src/components/Nav.js | 45 +++++++++++++++++++ app-react/src/index.js | 17 +++++++ app-react/src/pages/Browse/index.js | 66 +++++++++++++++++++++++++++ app-react/src/pages/Home.js | 0 app-react/src/reportWebVitals.js | 13 ++++++ app-react/src/setupTests.js | 5 +++ app-react/src/styles/browse.css | 6 +++ app-react/src/styles/index.css | 13 ++++++ app-react/src/styles/table.css | 4 ++ app/src/App.vue | 34 +++++++------- app/src/router/index.js | 9 ++-- app/src/views/AboutView.vue | 5 --- app/src/views/browse/BrowseMain.vue | 37 +++++++++++++++ app/vue.config.js | 10 ++++- 22 files changed, 428 insertions(+), 29 deletions(-) create mode 100644 app-react/package.json create mode 100644 app-react/public/favicon.ico create mode 100644 app-react/public/index.html create mode 100644 app-react/public/manifest.json create mode 100644 app-react/public/robots.txt create mode 100644 app-react/src/App.js create mode 100644 app-react/src/App.test.js create mode 100644 app-react/src/components/Footer.js create mode 100644 app-react/src/components/Nav.js create mode 100644 app-react/src/index.js create mode 100644 app-react/src/pages/Browse/index.js create mode 100644 app-react/src/pages/Home.js create mode 100644 app-react/src/reportWebVitals.js create mode 100644 app-react/src/setupTests.js create mode 100644 app-react/src/styles/browse.css create mode 100644 app-react/src/styles/index.css create mode 100644 app-react/src/styles/table.css delete mode 100644 app/src/views/AboutView.vue create mode 100644 app/src/views/browse/BrowseMain.vue diff --git a/app-react/package.json b/app-react/package.json new file mode 100644 index 00000000..167fb547 --- /dev/null +++ b/app-react/package.json @@ -0,0 +1,40 @@ +{ + "name": "app", + "version": "0.1.0", + "private": true, + "dependencies": { + "@testing-library/jest-dom": "^5.16.5", + "@testing-library/react": "^13.4.0", + "@testing-library/user-event": "^13.5.0", + "react": "^18.2.0", + "react-dom": "^18.2.0", + "react-router-dom": "^6.4.2", + "react-scripts": "5.0.1", + "web-vitals": "^2.1.4" + }, + "scripts": { + "start": "react-scripts start", + "build": "react-scripts build", + "test": "react-scripts test", + "eject": "react-scripts eject" + }, + "eslintConfig": { + "extends": [ + "react-app", + "react-app/jest" + ] + }, + "browserslist": { + "production": [ + ">0.2%", + "not dead", + "not op_mini all" + ], + "development": [ + "last 1 chrome version", + "last 1 firefox version", + "last 1 safari version" + ] + }, + "proxy": "http://localhost:5000" +} diff --git a/app-react/public/favicon.ico b/app-react/public/favicon.ico new file mode 100644 index 0000000000000000000000000000000000000000..a11777cc471a4344702741ab1c8a588998b1311a GIT binary patch literal 3870 zcma);c{J4h9>;%nil|2-o+rCuEF-(I%-F}ijC~o(k~HKAkr0)!FCj~d>`RtpD?8b; 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+ + + diff --git a/app-react/public/manifest.json b/app-react/public/manifest.json new file mode 100644 index 00000000..838fc40c --- /dev/null +++ b/app-react/public/manifest.json @@ -0,0 +1,25 @@ +{ + "short_name": "ORD", + "name": "Open Reaction Database", + // "icons": [ + // { + // "src": "favicon.ico", + // "sizes": "64x64 32x32 24x24 16x16", + // "type": "image/x-icon" + // }, + // { + // "src": "logo192.png", + // "type": "image/png", + // "sizes": "192x192" + // }, + // { + // "src": "logo512.png", + // "type": "image/png", + // "sizes": "512x512" + // } + // ], + "start_url": ".", + "display": "standalone", + "theme_color": "#000000", + "background_color": "#ffffff" +} diff --git a/app-react/public/robots.txt b/app-react/public/robots.txt new file mode 100644 index 00000000..e9e57dc4 --- /dev/null +++ b/app-react/public/robots.txt @@ -0,0 +1,3 @@ +# https://www.robotstxt.org/robotstxt.html +User-agent: * +Disallow: diff --git a/app-react/src/App.js b/app-react/src/App.js new file mode 100644 index 00000000..41de5d68 --- /dev/null +++ b/app-react/src/App.js @@ -0,0 +1,37 @@ +import { BrowserRouter as Router, Routes, Route } from "react-router-dom" +import Nav from "./components/Nav" +import Footer from "./components/Footer" +// routes +import Browse from "./pages/Browse/index" + +function App() { + return ( + +
+
+ + ); +} + +export default App; diff --git a/app-react/src/App.test.js b/app-react/src/App.test.js new file mode 100644 index 00000000..1f03afee --- /dev/null +++ b/app-react/src/App.test.js @@ -0,0 +1,8 @@ +import { render, screen } from '@testing-library/react'; +import App from './App'; + +test('renders learn react link', () => { + render(); + const linkElement = screen.getByText(/learn react/i); + expect(linkElement).toBeInTheDocument(); +}); diff --git a/app-react/src/components/Footer.js b/app-react/src/components/Footer.js new file mode 100644 index 00000000..02284281 --- /dev/null +++ b/app-react/src/components/Footer.js @@ -0,0 +1,13 @@ + +const Footer = () => { + return ( + // https://radu.link/make-footer-stay-bottom-page-bootstrap/ +
+
+ © Copyright 2022 Open Reaction Database Project Authors +
+
+ ) +} + +export default Footer \ No newline at end of file diff --git a/app-react/src/components/Nav.js b/app-react/src/components/Nav.js new file mode 100644 index 00000000..791f0144 --- /dev/null +++ b/app-react/src/components/Nav.js @@ -0,0 +1,45 @@ +import { Link } from "react-router-dom" + +const Nav = () => { + return ( + + ) +} + +export default Nav \ No newline at end of file diff --git a/app-react/src/index.js b/app-react/src/index.js new file mode 100644 index 00000000..80ecac82 --- /dev/null +++ b/app-react/src/index.js @@ -0,0 +1,17 @@ +import React from 'react'; +import ReactDOM from 'react-dom/client'; +import './styles/index.css'; +import App from './App'; +import reportWebVitals from './reportWebVitals'; + +const root = ReactDOM.createRoot(document.getElementById('root')); +root.render( + + + +); + +// If you want to start measuring performance in your app, pass a function +// to log results (for example: reportWebVitals(console.log)) +// or send to an analytics endpoint. Learn more: https://bit.ly/CRA-vitals +reportWebVitals(); diff --git a/app-react/src/pages/Browse/index.js b/app-react/src/pages/Browse/index.js new file mode 100644 index 00000000..2408f808 --- /dev/null +++ b/app-react/src/pages/Browse/index.js @@ -0,0 +1,66 @@ +import { useEffect, useState } from "react" +import "../../styles/browse.css" + +const Browse = () => { + const [tableData, setTableData] = useState([]) + + useEffect(() => { + fetch("client/api/fetch_datasets", {method: "GET"}) + .then(response => response.json()) + .then(data => { + setTableData(data) + }) + return + }, []) + + return ( +
+ + + + + + + + + + + {tableData.map((row) => ( + + + + + + + ))} + +
Dataset IDNameDescriptionSize
+ {row["Dataset ID"]} + + {row.Name} + + {row.Description} + + {row.Size} +
+
+
+
Dataset ID
+
Name
+
Description
+
Size
+
+ {tableData.map((row) => ( +
+
{row["Dataset ID"]}
+
{row.Name}
+
{row.Description}
+
{row.Size}
+
+ ))} +
+
+ ) +} + +export default Browse \ No newline at end of file diff --git a/app-react/src/pages/Home.js b/app-react/src/pages/Home.js new file mode 100644 index 00000000..e69de29b diff --git a/app-react/src/reportWebVitals.js b/app-react/src/reportWebVitals.js new file mode 100644 index 00000000..5253d3ad --- /dev/null +++ b/app-react/src/reportWebVitals.js @@ -0,0 +1,13 @@ +const reportWebVitals = onPerfEntry => { + if (onPerfEntry && onPerfEntry instanceof Function) { + import('web-vitals').then(({ getCLS, getFID, getFCP, getLCP, getTTFB }) => { + getCLS(onPerfEntry); + getFID(onPerfEntry); + getFCP(onPerfEntry); + getLCP(onPerfEntry); + getTTFB(onPerfEntry); + }); + } +}; + +export default reportWebVitals; diff --git a/app-react/src/setupTests.js b/app-react/src/setupTests.js new file mode 100644 index 00000000..8f2609b7 --- /dev/null +++ b/app-react/src/setupTests.js @@ -0,0 +1,5 @@ +// jest-dom adds custom jest matchers for asserting on DOM nodes. +// allows you to do things like: +// expect(element).toHaveTextContent(/react/i) +// learn more: https://github.com/testing-library/jest-dom +import '@testing-library/jest-dom'; diff --git a/app-react/src/styles/browse.css b/app-react/src/styles/browse.css new file mode 100644 index 00000000..c0cfb8ce --- /dev/null +++ b/app-react/src/styles/browse.css @@ -0,0 +1,6 @@ +.dataset_table_cell.ellipsis { + white-space: nowrap; + overflow: hidden; + text-overflow: ellipsis; + max-width: 400px; +} \ No newline at end of file diff --git a/app-react/src/styles/index.css b/app-react/src/styles/index.css new file mode 100644 index 00000000..ec2585e8 --- /dev/null +++ b/app-react/src/styles/index.css @@ -0,0 +1,13 @@ +body { + margin: 0; + font-family: -apple-system, BlinkMacSystemFont, 'Segoe UI', 'Roboto', 'Oxygen', + 'Ubuntu', 'Cantarell', 'Fira Sans', 'Droid Sans', 'Helvetica Neue', + sans-serif; + -webkit-font-smoothing: antialiased; + -moz-osx-font-smoothing: grayscale; +} + +code { + font-family: source-code-pro, Menlo, Monaco, Consolas, 'Courier New', + monospace; +} diff --git a/app-react/src/styles/table.css b/app-react/src/styles/table.css new file mode 100644 index 00000000..896f75b6 --- /dev/null +++ b/app-react/src/styles/table.css @@ -0,0 +1,4 @@ +.table-container { + background-color: white; + border-radius: 1rem; +} \ No newline at end of file diff --git a/app/src/App.vue b/app/src/App.vue index ec98c47b..baed637f 100644 --- a/app/src/App.vue +++ b/app/src/App.vue @@ -7,24 +7,24 @@ diff --git a/app/src/router/index.js b/app/src/router/index.js index d3a856ef..a9c66dfb 100644 --- a/app/src/router/index.js +++ b/app/src/router/index.js @@ -8,12 +8,9 @@ const routes = [ component: HomeView }, { - path: '/about', - name: 'about', - // route level code-splitting - // this generates a separate chunk (about.[hash].js) for this route - // which is lazy-loaded when the route is visited. - component: () => import(/* webpackChunkName: "about" */ '../views/AboutView.vue') + path: '/browse', + name: 'browse', + component: () => import('../views/browse/BrowseMain.vue') } ] diff --git a/app/src/views/AboutView.vue b/app/src/views/AboutView.vue deleted file mode 100644 index 3fa28070..00000000 --- a/app/src/views/AboutView.vue +++ /dev/null @@ -1,5 +0,0 @@ - diff --git a/app/src/views/browse/BrowseMain.vue b/app/src/views/browse/BrowseMain.vue new file mode 100644 index 00000000..3f7aebbf --- /dev/null +++ b/app/src/views/browse/BrowseMain.vue @@ -0,0 +1,37 @@ + + + + + \ No newline at end of file diff --git a/app/vue.config.js b/app/vue.config.js index 910e297e..e3d8e053 100644 --- a/app/vue.config.js +++ b/app/vue.config.js @@ -1,4 +1,12 @@ const { defineConfig } = require('@vue/cli-service') module.exports = defineConfig({ - transpileDependencies: true + transpileDependencies: true, + devServer: { + proxy: { + "^/api": { + target: "http://localhost:5000/client/", + changeOrigin: true + } + } + } }) From e53b7ebec8ae840f542f0778f25f75df6616802c Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Thu, 3 Nov 2022 14:02:24 -0400 Subject: [PATCH 011/220] main components in place --- app/src/App.vue | 41 +++++-------- app/src/components/HeaderNav.vue | 40 +++++++++++++ app/src/components/HelloWorld.vue | 59 ------------------- app/src/components/MainFooter.vue | 14 +++++ app/src/router/index.js | 6 +- app/src/views/{HomeView.vue => Home.vue} | 7 +-- .../browse/{BrowseMain.vue => MainBrowse.vue} | 0 app/webpag.config.js | 4 -- 8 files changed, 76 insertions(+), 95 deletions(-) create mode 100644 app/src/components/HeaderNav.vue delete mode 100644 app/src/components/HelloWorld.vue create mode 100644 app/src/components/MainFooter.vue rename app/src/views/{HomeView.vue => Home.vue} (52%) rename app/src/views/browse/{BrowseMain.vue => MainBrowse.vue} (100%) delete mode 100644 app/webpag.config.js diff --git a/app/src/App.vue b/app/src/App.vue index baed637f..be301d12 100644 --- a/app/src/App.vue +++ b/app/src/App.vue @@ -1,30 +1,21 @@ - \ No newline at end of file From 49efbbdecc8cf43320c38513d6ff01a8fa4d866e Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Fri, 4 Nov 2022 10:35:01 -0400 Subject: [PATCH 020/220] full suite of pagination functionality --- app/src/components/EntityTable.vue | 47 +++++++++++++++++++++++------ app/src/views/browse/MainBrowse.vue | 1 - 2 files changed, 38 insertions(+), 10 deletions(-) diff --git a/app/src/components/EntityTable.vue b/app/src/components/EntityTable.vue index d2201394..779f58fa 100644 --- a/app/src/components/EntityTable.vue +++ b/app/src/components/EntityTable.vue @@ -2,7 +2,12 @@ export default { props: { tableData: Array, - pagination: Number, + }, + watch: { + pagination() { + // set current page to 1 when pagination value changes to currentPage > lastPage + this.currentPage = 1 + } }, data() { return { @@ -11,6 +16,7 @@ export default { search: '', currentPage: 1, loading: true, + pagination: 10, } }, computed: { @@ -49,7 +55,14 @@ export default { }, async mounted() { // this.entities = this.tableData - this.entities = Array.apply(null, Array(100)).map(idx => this.tableData[0]) + this.entities = Array.apply(null, Array(500)).map((val,idx) => { + return { + "Dataset ID": `${this.tableData[0]["Dataset ID"]}${Math.floor(Math.random() * idx)}`, + Name: `${this.tableData[0].Name} ${Math.floor(Math.random() * idx)}`, + Description: this.tableData[0].Description, + Size: this.tableData[0].Size + Math.floor(Math.random() * idx), + } + }) } } @@ -73,6 +86,17 @@ export default { .pagination( v-if='pagination && entities && entities.length > pagination' ) + .select Showing + select( + name="pagination" + id="pagination" + v-model='pagination' + ) + option(value=10) 10 + option(value=25) 25 + option(value=50) 50 + option(value=100) 100 + | of {{entities.length}} entries. .paginav.first(@click='currentPage = 1') img.chevron(src='/img/arrowL.png') img.chevron(src='/img/arrowL.png') @@ -102,6 +126,8 @@ export default { \ No newline at end of file diff --git a/app/src/views/search/SearchOptions.vue b/app/src/views/search/SearchOptions.vue new file mode 100644 index 00000000..a23637f3 --- /dev/null +++ b/app/src/views/search/SearchOptions.vue @@ -0,0 +1,71 @@ + + + + + \ No newline at end of file From e715e3c34dc5529c88055f202d52af612d78b461 Mon Sep 17 00:00:00 2001 From: Michael Kennel Date: Fri, 4 Nov 2022 14:22:08 -0400 Subject: [PATCH 023/220] structure and basic values for reagents --- app/public/index.html | 1 + app/src/views/search/SearchOptions.vue | 97 +++++++++++++++++++++----- 2 files changed, 81 insertions(+), 17 deletions(-) diff --git a/app/public/index.html b/app/public/index.html index 4df5c67a..b6b4b635 100644 --- a/app/public/index.html +++ b/app/public/index.html @@ -33,6 +33,7 @@ +
+
+ logo +

+ Edit src/App.js and save to reload. +

+ + Learn React + +
+