Skip to content

Commit d54c0d3

Browse files
committed
Bump version
1 parent acb4017 commit d54c0d3

File tree

4 files changed

+56
-47
lines changed

4 files changed

+56
-47
lines changed

DESCRIPTION

Lines changed: 1 addition & 1 deletion
Original file line numberDiff line numberDiff line change
@@ -1,6 +1,6 @@
11
Package: canaper
22
Title: Categorical Analysis of Neo- And Paleo-Endemism
3-
Version: 0.0.1
3+
Version: 0.0.2
44
Authors@R:
55
c(
66
person(given = "Joel H.",

NEWS.md

Lines changed: 14 additions & 8 deletions
Original file line numberDiff line numberDiff line change
@@ -1,28 +1,34 @@
1+
canaper 0.0.2
2+
===============
3+
4+
### BUG FIXES
5+
6+
* [Fix bug](https://github.com/joelnitta/canaper/commit/acb40172c2d5ffb04e13519c6cad7c6d00fa451a) where `cpr_rand_test()` was failing to return identical results after `set.seed()` when parallelization is on
7+
18
canaper 0.0.1
29
===============
310

411
### NEW FEATURES
512

6-
* Add `cpr_rand_comm()` function for generating a random community
7-
2f3318c1d62f401d7c99bdcc16c64194359c3fbe
13+
* [Add `cpr_rand_comm()` function](https://github.com/joelnitta/canaper/commit/2f3318c1d62f401d7c99bdcc16c64194359c3fbe) for generating a random community
814

915
* Implement user-provided community matrix randomization functions
1016

1117
### BREAKING CHANGES
1218

13-
* Use `vegan` for community matrix randomizations instead of `picante`
14-
b0a2d47130398eb62e28eba4783057f781763645
19+
* [Use `vegan`](https://github.com/joelnitta/canaper/commit/b0a2d47130398eb62e28eba4783057f781763645) for community matrix randomizations instead of `picante`
20+
1521

1622
### BUG FIXES
1723

18-
* Fix error in classification of endemism types with `cpr_classify_endem()`,
24+
* [Fix error](https://github.com/joelnitta/canaper/commit/2f3318c1d62f401d7c99bdcc16c64194359c3fbe) in classification of endemism types with `cpr_classify_endem()`,
1925
where super-endemic cells were previously being assigned if `pe_obs_p_upper`
2026
**or** `pe_obs_alt_p_upper` were highly significant (P > 0.99), to requiring
21-
**both** to be highly significant 2f3318c1d62f401d7c99bdcc16c64194359c3fbe
27+
**both** to be highly significant
2228

23-
* Fix calculation of RPD, RPE where alternative tree had all branch lengths
29+
* [Fix calculation](https://github.com/joelnitta/canaper/commit/50ed6e975d14adba334f06a984d521ff69ed961c) of RPD, RPE where alternative tree had all branch lengths
2430
converted to same value, to converting only non-zero branch lengths to same
25-
value 50ed6e975d14adba334f06a984d521ff69ed961c
31+
value
2632

2733
canaper 0.0.0.9000
2834
===============

codemeta.json

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -10,13 +10,13 @@
1010
"codeRepository": "https://github.com/joelnitta/canaper",
1111
"issueTracker": "https://github.com/joelnitta/canaper/issues",
1212
"license": "https://spdx.org/licenses/MIT",
13-
"version": "0.0.1",
13+
"version": "0.0.2",
1414
"programmingLanguage": {
1515
"@type": "ComputerLanguage",
1616
"name": "R",
1717
"url": "https://r-project.org"
1818
},
19-
"runtimePlatform": "R version 4.1.1 (2021-08-10)",
19+
"runtimePlatform": "R version 4.1.2 (2021-11-01)",
2020
"author": [
2121
{
2222
"@type": "Person",
@@ -370,7 +370,7 @@
370370
}
371371
],
372372
"releaseNotes": "https://github.com/joelnitta/canaper/blob/master/NEWS.md",
373-
"fileSize": "7891.857KB",
373+
"fileSize": "8154.89KB",
374374
"contIntegration": ["https://github.com/joelnitta/canaper/actions", "https://codecov.io/gh/joelnitta/canaper?branch=main"],
375375
"developmentStatus": "https://www.repostatus.org/#wip",
376376
"keywords": [

inst/WORDLIST

Lines changed: 38 additions & 35 deletions
Original file line numberDiff line numberDiff line change
@@ -1,38 +1,62 @@
1-
Affero
21
AGPL
2+
Affero
3+
Biodiverse
4+
BugReports
5+
CMD
6+
Codecov
7+
Commun
8+
ComputerLanguage
9+
Config
10+
DOI
11+
DOIs
12+
Endemism
13+
González
14+
Iwasaki
15+
Knerr
16+
Laffan
17+
LazyData
18+
MERCHANTABILITY
19+
Mishler
20+
Nitta
21+
ORCID
22+
Orozco
23+
Paleo
24+
Phylocom
25+
README
26+
RPD
27+
RPE
28+
Roxygen
29+
RoxygenNote
30+
SoftwareApplication
31+
SoftwareSourceCode
32+
Sublicensing
33+
VignetteBuilder
34+
WIP
35+
WIPO
36+
Wataru
337
al
438
anthonynorth
539
assertr
640
assertthat
741
aut
8-
Biodiverse
942
bioRxiv
10-
BugReports
1143
canaper
12-
CMD
44+
codeRepository
1345
codecov
14-
Codecov
1546
codemeta
16-
codeRepository
17-
Commun
18-
ComputerLanguage
19-
Config
2047
contIntegration
21-
copyrightable
2248
copyrightHolder
49+
copyrightable
2350
covr
2451
cran
2552
cre
2653
ctb
2754
datePublished
2855
developmentStatus
2956
doi
30-
DOI
31-
DOIs
3257
dplyr
3358
dtc
3459
endemism
35-
Endemism
3660
et
3761
familyName
3862
fileSize
@@ -42,71 +66,50 @@ gh
4266
github
4367
givenName
4468
gmail
45-
González
4669
http
4770
https
4871
io
4972
issueTracker
50-
Iwasaki
5173
joelnitta
52-
Knerr
5374
knitr
54-
Laffan
55-
LazyData
5675
lgpl
5776
licensors
5877
magrittr
5978
md
60-
MERCHANTABILITY
61-
Mishler
6279
ncomms
6380
neo
6481
neoendemic
65-
Nitta
6682
noncommercially
6783
orcid
68-
ORCID
69-
Orozco
7084
paleo
71-
Paleo
7285
paleoendemic
86+
parallelization
7387
phangorn
74-
Phylocom
7588
phyloregion
7689
programmingLanguage
7790
progressr
7891
purrr
7992
readme
80-
README
8193
releaseNotes
8294
relicensing
8395
renv
8496
repostatus
8597
rmarkdown
8698
roclet
8799
roclets
88-
Roxygen
89-
RoxygenNote
90100
roxyglobals
91101
runtimePlatform
92102
sameAs
93-
SoftwareApplication
94103
softwareRequirements
95-
SoftwareSourceCode
96104
softwareSuggestions
97105
spdx
98106
srr
99107
stringr
100108
sublicenses
101-
Sublicensing
102109
testthat
103110
tibble
104111
tictoc
105112
tidyverse
106-
VignetteBuilder
107-
Wataru
108113
wip
109-
WIP
110-
WIPO
111114
www
112115
zenodo

0 commit comments

Comments
 (0)