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Fix for issue #49 #64

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Fix for issue #49 #64

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bef606b
Set default for voxel_size on inference
jamaliki Aug 22, 2023
baaf17a
Set default for voxel_size on inference
jamaliki Aug 22, 2023
783418b
Update __init__.py
jamaliki Aug 22, 2023
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2 changes: 1 addition & 1 deletion model_angelo/__init__.py
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Original file line number Diff line number Diff line change
Expand Up @@ -5,4 +5,4 @@
"""


__version__ = "1.0.1"
__version__ = "1.0.2"
2 changes: 1 addition & 1 deletion model_angelo/gnn/inference.py
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Original file line number Diff line number Diff line change
Expand Up @@ -57,7 +57,7 @@ def infer(args):
batch_converter = alphabet.get_batch_converter()

lang_model = lang_model.eval()
voxel_size = args.voxel_size
voxel_size = getattr(args, "voxel_size", 1.0)

rna_sequences, dna_sequences = [], []
if args.rna_fasta is not None:
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2 changes: 1 addition & 1 deletion model_angelo/gnn/inference_no_seq.py
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Expand Up @@ -42,7 +42,7 @@ def infer(args):
device_names = get_device_names(args.device)
num_devices = len(device_names)

voxel_size = args.voxel_size
voxel_size = getattr(args, "voxel_size", 1.0)

protein = None
if args.struct.endswith("prot"):
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