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Investigate redun visualisation error KeyError: 'agnode: no key'

Status: Open.

#216 In AgResearch/gbs_prism;

· tesujimath opened on Dec 11, 2025

autostart of gbs_prism has an error when launched prior to the run directory being synced off the staging server

questionFurther information is requestedFurther information is requested

Status: Open.

#214 In AgResearch/gbs_prism;

· BenjaminJPerry opened on Nov 13, 2025

Update the README

enhancementNew feature or requestNew feature or request

Status: Open.

#207 In AgResearch/gbs_prism;

· BenjaminJPerry opened on Oct 29, 2025

Quick kraken2 check on subsampled reads using a custom kraken2 index of common eukaryotic genomes

enhancementNew feature or requestNew feature or request

Status: Open.

#194 In AgResearch/gbs_prism;

· BenjaminJPerry opened on Oct 16, 2025

Can we expose SLURM jobIDs in redun console?

Status: Open.

#170 In AgResearch/gbs_prism;

· rbrauning opened on Jul 29, 2025

Split lanes section in run_kgd.R could be run inconsistently when using uber keyfiles

Status: Open.

#164 In AgResearch/gbs_prism;

· doddsk opened on Jul 24, 2025

Dedupe summary in HTML Report

Status: Open.

#160 In AgResearch/gbs_prism;

· oldrooster opened on Jun 30, 2025

Migrate the fastq sym-links and their location in the context file - for next release

enhancementNew feature or requestNew feature or request

Status: Open.

#147 In AgResearch/gbs_prism;

· BenjaminJPerry opened on May 25, 2025

KGD errors are not forwarded through to reports

Status: Open.

#141 In AgResearch/gbs_prism;

· tesujimath opened on May 18, 2025

Updating the SampleSheet.csv in active/ run directory or postprocessing/.../[run]/ directory does not trigger a rerun of all necessary tasks

Status: Open.

#101 In AgResearch/gbs_prism;

· BenjaminJPerry opened on Apr 28, 2025

Client Summary Reports

Status: Open.

#70 In AgResearch/gbs_prism;

· BenjaminJPerry opened on Mar 18, 2025

kmer plots not appearing in peacock.html

Status: Open.

#60 In AgResearch/gbs_prism;

· BenjaminJPerry opened on Feb 24, 2025