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model load: <code>Missing key(s) in state_dict</code>

bugSomething isn't workingSomething isn't working

Status: Open.

#430 In BayraktarLab/cell2location;

· aowenson-imm opened on Nov 27, 2025

Is it feasible to use cell2location to distinguish between malignant and non-malignant states of the same cell type?

questionFurther information is requestedFurther information is requested

Status: Open.

#429 In BayraktarLab/cell2location;

· nihaoWX opened on Nov 18, 2025

Expected value argument (Tensor of shape (2500, 12666))

bugSomething isn't workingSomething isn't working

Status: Open.

#428 In BayraktarLab/cell2location;

· nine-sarayut opened on Nov 14, 2025

Does cell2location support multi-gpu ?

questionFurther information is requestedFurther information is requested

Status: Open.

#426 In BayraktarLab/cell2location;

· AtlasMaroc opened on Nov 8, 2025

cell2location_tutorial.ipynb cell 29 not working for 'Series' object has no attribute 'nonzero

bugSomething isn't workingSomething isn't working

Status: Open.

#424 In BayraktarLab/cell2location;

· huxs001 opened on Oct 23, 2025

Xenium

enhancementNew feature or requestNew feature or request

Status: Open.

#422 In BayraktarLab/cell2location;

· Sophielsn opened on Sep 30, 2025

Runtime differences in version 0.1.3 and 0.1.4. [related to batch_size=None and training on large data - see issue #365]

FAQ

Status: Open.

#421 In BayraktarLab/cell2location;

· Qkrdudtj-ep opened on Sep 25, 2025

Questions when following the official tutorial (use_gpu, samples attribute, QC plotting)

bugSomething isn't workingSomething isn't working

Status: Open.

#417 In BayraktarLab/cell2location;

· asmlgkj opened on Sep 4, 2025

ValueError: at site "data_target", invalid log_prob shape

questionFurther information is requestedFurther information is requested

Status: Open.

#416 In BayraktarLab/cell2location;

· nextgenius-ai opened on Aug 30, 2025

How to make make more CPU work in cell2location?

questionFurther information is requestedFurther information is requested

Status: Open.

#415 In BayraktarLab/cell2location;

· Rong-ao opened on Aug 28, 2025

Error saving anndata object with cell-type specific expression of every gene in the spatial data (needed for NCEM)

bugSomething isn't workingSomething isn't working

Status: Open.

#412 In BayraktarLab/cell2location;

· quiquevb23 opened on Jul 30, 2025

Invalid log_prob shape

bugSomething isn't workingSomething isn't working

Status: Open.

#411 In BayraktarLab/cell2location;

· HarryZhang1224 opened on Jul 18, 2025