Comparison of antimicrobial resistance annotations

Data

Run (using Jug) the script get-data.py in the data/ sub-directory.

Conda environments

The envs/ subdirectory includes conda environment files.

• arg-compare.yml: main environment, includes Jug & RGI
• deeparg_env.yml: deepARG (requires a different version of Python)
• hamronization.yml: hAMRonization