USeq_9.3.6

Major refactoring of the Kegg pathway analysis package to enable seamless joint expression and variant analysis, and pull the most
recent networks from Kegg via their API.

Check the commit logs.

USeq_9.3.5

See commit notes.

USeq_9.3.4

No bug fixes just new features including a comprehensive tool for identifying Loss of Heterozygosity events.

USeq_9.3.3

Release of new tools for somatic variant pathway analysis and Caris clinical test data processing and integration. Lots of modifications for TNRunner2 workflows. See the commit logs.

USeq_9.3.2

Major update to the TNRunner process for running T/N + RNASeq analysis. See the optimized TNRunner2 app and the updated snakemake workflows, https://github.com/HuntsmanCancerInstitute/Workflows/tree/master/Hg38RunnerWorkflows2

USeq_9.3.1

Lots of updates to tools for annotating variants for clinical interpretation and building streamlined alignment and QC workflows. See the commit logs.

USeq_9.3.0

See the commit logs.

USeq_9.2.9

See commit notes.

USeq_9.2.8

See the git commit logs.

USeq_9.2.7

See commit logs.