Updates for 24.11

AnimalRequests/module.properties

@@ -3,6 +3,5 @@ Label: Enter Animal Requests into EHR
 Description: Simple module that utilizes React and Typescript to enter animal requests into WNPRC EHR
 URL: https://github.com/WNPRC-EHR-Services/wnprc-modules/AnimalRequests
 License: Apache 2.0
-SupportedDatabases: pgsql
 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0
 ManageVersion: false

ApiKey/build.gradle

@@ -18,11 +18,7 @@ dependencies {
             "Eclipse Distribution License v1.0",
             "http://www.eclipse.org/org/documents/edl-v10.php",
             "Parsing XML"
-        ),
-        {
-            // Exclude in favor of angus activation from API
-            exclude group: "jakarta.activation", module: "jakarta.activation-api"
-        }
+        )
     )
 
     BuildUtils.addExternalDependency(

ApiKey/module.properties

@@ -4,4 +4,3 @@ LicenseURL: http://www.apache.org/licenses/LICENSE-2.0
 ModuleClass: org.labkey.apikey.ApiKeyModule
 Name: ApiKey
 ManageVersion: false
-SupportedDatabases: pgsql

DBUtils/build.gradle

@@ -19,11 +19,7 @@ dependencies {
             "Eclipse Distribution License v1.0",
             "http://www.eclipse.org/org/documents/edl-v10.php",
             "Parsing XML"
-        ),
-        {
-            // Exclude in favor of angus activation from API
-            exclude group: "jakarta.activation", module: "jakarta.activation-api"
-        }
+        )
     )
 
     BuildUtils.addExternalDependency(

DBUtils/module.properties

@@ -4,4 +4,3 @@ Name: DBUtils
 RequiredServerVersion: 16.3
 SchemaVersion: 17.2
 ManageVersion: false
-SupportedDatabases: pgsql

DeviceProxy/build.gradle

@@ -18,11 +18,7 @@ dependencies {
             "Eclipse Distribution License v1.0",
             "http://www.eclipse.org/org/documents/edl-v10.php",
             "Parsing XML"
-        ),
-        {
-            // Exclude in favor of angus activation from API
-            exclude group: "jakarta.activation", module: "jakarta.activation-api"
-        }
+        )
     )
 
     BuildUtils.addExternalDependency(

DeviceProxy/module.properties

@@ -4,4 +4,3 @@ LicenseURL: http://www.apache.org/licenses/LICENSE-2.0
 ModuleClass: org.labkey.deviceproxy.DeviceProxyModule
 Name: DeviceProxy
 ManageVersion: false
-SupportedDatabases: pgsql

ETLChemistryAnalyzer/module.properties

@@ -2,4 +2,4 @@ ModuleClass: org.labkey.ETLChemistryAnalyzer.ETLChemistryAnalyzerModule
 Label: ETL Chemistry Analyzer
 License: Apache 2.0
 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0
-ManageVersion: false
+ManageVersion: false

ETLChemistryAnalyzer/resources/views/welcome.view.xml

@@ -1,5 +1,5 @@
 <view xmlns="http://labkey.org/data/xml/view" title="ChemistryAnalyzer ETL Module">
-    <permissionClasses>
+    <requiresPermissions>
         <permissionClass name="org.labkey.api.security.permissions.ReadPermission"/>
-    </permissionClasses>
+    </requiresPermissions>
 </view>

GoogleDrive/module.properties

@@ -8,4 +8,3 @@ RequiredServerVersion: 15.2
 URL: https://github.com/WNPRC-EHR-Services/GoogleDrive
 SchemaVersion: 1.000
 ManageVersion: false
-SupportedDatabases: pgsql

SelfRegistration/module.properties

@@ -6,4 +6,4 @@ URL: https://github.com/WNPRC-EHR-Services/wnprc-modules/SelfRegistration
 License: Apache 2.0
 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0
 Name: SelfRegistration
-ManageVersion: false
+ManageVersion: false

WNPRC_Compliance/module.properties

@@ -4,6 +4,6 @@ License: Apache 2.0
 LicenseURL: http://www.apache.org/licenses/LICENSE-2.0
 ModuleClass: org.labkey.wnprc_compliance.WNPRC_ComplianceModule
 Name: WNPRC_Compliance
-SchemaVersion: 21.001
+SchemaVersion: 25.001
 SupportedDatabases: pgsql
 ManageVersion: false

WNPRC_Compliance/resources/queries/wnprc_compliance/MostRecentAccessReportSummary.sql

@@ -11,33 +11,23 @@ personsList.isArchived,
 card_info.first_name,
 card_info.last_name,
 card_info.middle_name,
-card_info.department,
-card_info.employee_number,
-card_info.info2,
-card_info.info3,
-card_info.info5,
 
-access_info.areas,
+access_info.access_levels,
 
 persons_to_cards.personid
 
 FROM (
   SELECT
   report_id,
   card_id,
-  GROUP_CONCAT(display_area, ';') as areas
+  GROUP_CONCAT(access_level, ';') as access_levels
 
 
   FROM (
     SELECT
     reports.report_id,
     report_data.card_id,
-    report_data.enabled,
-    report_data.area,
-    CASE
-      WHEN report_data.enabled IS FALSE THEN CAST(COALESCE(report_data.area, '') || ' (disabled)' as VARCHAR)
-      ELSE report_data.area
-    END as display_area
+    report_data.access_level,
 
 
     FROM  wnprc_compliance.access_reports reports, wnprc_compliance.access_report_data report_data

WNPRC_Compliance/resources/queries/wnprc_compliance/personsList.sql

@@ -4,7 +4,6 @@ last_name,
 first_name,
 middle_name,
 date_of_birth,
-cardInfo.employee_number,
 notes,
 tbResults.lastClearance as lastTbClearance,
 measlesResults.lastClearance as measlesClearance,
@@ -51,16 +50,3 @@ LEFT JOIN (
 
 ON measlesResults.person_id = persons.personid
 
---Adding employee_number from card_info table. Need to select the latest uploaded record to the card_info table
---Use person_to_cards table to link the personid to the card_id.
-LEFT JOIN wnprc_compliance.persons_to_cards pers_to_card ON (persons.personid = pers_to_card.personid)
-LEFT JOIN
-    (
-        SELECT card_info.employee_number, card_info.card_id, MAX(card_info.created)
-        FROM wnprc_compliance.card_info
-        GROUP BY card_info.card_id, card_info.employee_number
-    ) cardInfo
-ON (pers_to_card.cardid = cardInfo.card_id)
-
-ORDER BY last_name ASC
-

WNPRC_Compliance/resources/queries/wnprc_compliance/searchResults.sql

@@ -7,9 +7,9 @@ id,
 first_name,
 middle_name,
 last_name,
-display,
+COALESCE(display, '') as display,
 LCASE(display) as displayLcase,
-notes,
+COALESCE(notes, '') as notes,
 "type"
 
 FROM (
@@ -33,7 +33,7 @@ FROM (
   SELECT
   card_id as id,
   first_name,
-  middle_name,
+  COALESCE(middle_name, ''),
   last_name,
   COALESCE(first_name, '') || ' ' || COALESCE(middle_name, '') || ' ' || COALESCE(last_name, '') || ' (' || card_id || ')' as display,
   COALESCE(department || ';', '') || COALESCE(info2 || ';', '') || COALESCE(info3 || ';', '') as notes,
@@ -48,7 +48,7 @@ FROM (
   SELECT
   personid as id,
   first_name,
-  middle_name,
+  COALESCE(middle_name, ''),
   last_name,
   COALESCE(first_name, '') || ' ' || COALESCE(middle_name, '') || ' ' || COALESCE(last_name, '') as display,
   notes,

WNPRC_Compliance/resources/queries/wnprc_compliance/unidentifiedCards.sql

@@ -3,11 +3,10 @@ cards.card_id,
 last_name,
 first_name,
 middle_name,
-department,
-employee_number,
-info2,
-info3,
-info5
+card_info.card_type,
+to_char(card_info.date_issued , 'yyyy-MM-dd') AS date_issued,
+to_char(card_info.date_expire, 'yyyy-MM-dd') AS date_expire,
+card_info.issue_code
 
 FROM (
   SELECT
@@ -18,12 +17,16 @@ FROM (
     SELECT
     unknown_cards.card_id,
     card_info.report_id,
-    card_info.report_id.date
+    card_info.report_id.date,
+    card_info.card_type,
+    card_info.date_issued,
+    card_info.date_expire,
+    card_info.issue_code
 
     FROM (
       SELECT
       cards.card_id,
-      persons_to_cards.personid
+      persons_to_cards.personid,
 
       FROM (
         SELECT card_id

WNPRC_Compliance/resources/schemas/dbscripts/postgresql/wnprc_compliance-25.000-25.001.sql

@@ -0,0 +1,23 @@
+ALTER TABLE wnprc_compliance.card_info ADD COLUMN IF NOT EXISTS card_type text;
+ALTER TABLE wnprc_compliance.card_info ADD COLUMN IF NOT EXISTS date_issued timestamp;
+ALTER TABLE wnprc_compliance.card_info ADD COLUMN IF NOT EXISTS date_expire timestamp;
+ALTER TABLE wnprc_compliance.card_info ADD COLUMN IF NOT EXISTS issue_code int;
+
+ALTER TABLE wnprc_compliance.access_report_data RENAME TO access_report_data_old;
+
+
+DROP TABLE IF EXISTS wnprc_compliance.access_report_data;
+CREATE TABLE wnprc_compliance.access_report_data (
+  report_id TEXT,
+  access_level TEXT,
+  card_id TEXT,
+
+  container  entityid NOT NULL,
+  createdby  userid,
+  created    TIMESTAMP,
+  modifiedby userid,
+  modified   TIMESTAMP,
+
+  CONSTRAINT PK_access_report_data_new PRIMARY KEY (report_id, access_level, card_id),
+  CONSTRAINT FK_access_report_data_access_reports_new FOREIGN KEY (report_id) REFERENCES wnprc_compliance.access_reports (report_id)
+);

WNPRC_Compliance/resources/schemas/wnprc_compliance.xml

@@ -135,6 +135,18 @@
     </columns>
   </table>
   <table tableName="access_report_data" tableDbType="TABLE">
+    <columns>
+      <column columnName="report_id"/>
+      <column columnName="access_level"/>
+      <column columnName="card_id"/>
+      <column columnName="container"/>
+      <column columnName="createdby"/>
+      <column columnName="created"/>
+      <column columnName="modifiedby"/>
+      <column columnName="modified"/>
+    </columns>
+  </table>
+  <table tableName="access_report_data_old" tableDbType="TABLE">
     <columns>
       <column columnName="report_id"/>
       <column columnName="area"/>
@@ -156,6 +168,10 @@
       <column columnName="first_name"/>
       <column columnName="last_name"/>
       <column columnName="middle_name"/>
+      <column columnName="date_issued"/>
+      <column columnName="date_expire"/>
+      <column columnName="card_type"/>
+      <column columnName="issue_code"/>
       <column columnName="department"/>
       <column columnName="employee_number"/>
       <column columnName="info2"/>