Repository of script tools, examples, and contributed code for using the MG-RAST API

Repository of scripts and libraries for using the MG-RAST API and MG-RAST data

ABOUT

• tools - robust scripts for complex use cases written by MG-RAST developers

• examples - simple scripts showing API access written by MG-RAST developers

• contrib - code contributed by third parties

DEPENDENCIES

• matR - https://github.com/MG-RAST/matR

• Shock libs - https://github.com/MG-RAST/Shock/tree/master/libs

• Python libs

  • prettytable - https://pypi.python.org/pypi/PrettyTable
  • requests - http://docs.python-requests.org/en/latest
  • requests_toolbelt - https://github.com/sigmavirus24/requests-toolbelt
  • scipy - http://www.scipy.org
  • numpy - http://www.numpy.org

INSTALLATION

• git clone http://github.com/MG-RAST/MG-RAST-Tools
• cd MG-RAST-Tools
• python setup.py build
• sudo python setup.py install

Perl

In order for some perl scripts to run properly you have to add the mglib directory to your PERL5LIB.