v0.2.0

What's Changed

• Update template to v0.6.0 by @scverse-bot in #37
• setup codecov by @colganwi in #38
• Fix AnnData deprecation warnings during tests by @colganwi in #41
• Split permutation test by @eweine in #40
• Docs update by @colganwi in #42
• Expansion_pvalues by @isabellechan089 in #39
• docstring by @isabellechan089 in #43
• Update CHANGELOG for version 0.2.0 by @colganwi in #44

New Contributors

• @eweine made their first contribution in #40
• @isabellechan089 made their first contribution in #39

Full Changelog: 0.1.0...0.2.0

v0.1.0

What's Changed

• Legends by @colganwi in #29
• plotting updates by @colganwi in #30
• Ensure sort preserves edge metadata by @colganwi in #31
• Add tree root/leaf helpers and metadata DataFrame accessors by @colganwi in #32
• Add n_extant tool and ribbon plot for extant branch counts by @colganwi in #33
• Refactor fitness module and add attribute test by @colganwi in #35
• Add node fitness inference via Local Branching Index by @colganwi in #34
• v0.1.0 by @colganwi in #36

Full Changelog: v0.0.1...0.1.0

v0.0.1

What's Changed

• tree annotation by @colganwi in #1
• text as label by @colganwi in #2
• annotation borders by @colganwi in #3
• Clades by @colganwi in #4
• ancestral states by @colganwi in #5
• add depth by @colganwi in #6
• Distance by @colganwi in #7
• added neighbor distance by @colganwi in #8
• added cruft.json by @colganwi in #9
• Plotting update by @colganwi in #10
• cmaps can be linear segmented by @colganwi in #11
• fixed distance with dataframes by @colganwi in #12
• Leaf data patch by @colganwi in #13
• clades dtype argument by @colganwi in #14
• branch color vmax by @colganwi in #15
• Plot sparse by @colganwi in #16
• fixed dist compare bug by @colganwi in #17
• added autocorr by @colganwi in #18
• exposed utils by @colganwi in #19
• transpose neighbors by @colganwi in #20
• fixed autocorr with obsm by @colganwi in #21
• Scverse bot template update v2 yosef lab pycea by @colganwi in #23
• Update template to v0.5.0 by @scverse-bot in #22
• Update conf.py by @colganwi in #24
• plot categorical obsm by @colganwi in #25
• added datasets by @colganwi in #26
• Getting started by @colganwi in #27
• fixed typing by @colganwi in #28

New Contributors

• @colganwi made their first contribution in #1
• @scverse-bot made their first contribution in #22

Full Changelog: https://github.com/YosefLab/pycea/commits/v0.0.1