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28 changes: 28 additions & 0 deletions CHANGES
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The following is a high-level summary of the changes this dataset underwent
over the years, based on its git history.

0.06 2025-04-30

- Modify masks for 6/10 samples to separate fibers with a 1 px delineation

- Update author list and README

0.05 2021-11-30

- Update dataset after BEP031 community review

0.04 2021-09-13

- Add DOI

0.03 2021-07-15

- Enrich metadata

0.02 2020-10-08

- Format according to BIDS structure

0.01 2020-07-21

- Initial data upload
9 changes: 8 additions & 1 deletion README
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# data_axondeepseg_sem

SEM dataset for AxonDeepSeg (https://axondeepseg.readthedocs.io/)
10 rat spinal cord samples with axon and myelin manual segmentation labels. This dataset comprises acquisitions conducted by various researchers between 2015 and 2017. The images represent small cropped sections extracted from larger mosaic images.

- 10 rat spinal cord samples (cervical level) with axon and myelin manual segmentation labels.

- Isotropic pixel size resolution ranging from 0.05 to 0.18 um

- Every touching fiber is separated by a 1 pixel delineation in the masks.

- This dataset comprises acquisitions conducted by various researchers between 2015 and 2017. The images represent small cropped sections extracted from larger mosaic images.

Example dataset containing scanning electron microscopy (SEM) data to illustrate BIDS convention.
BIDS version 1.7.0
5 changes: 2 additions & 3 deletions dataset_description.json
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"Christian S. Perone",
"Ariane Saliani",
"Maxime Wabartha",
"Armand Collin",
"Julien Cohen-Adad"],
"DatasetDOI": "doi:10.5281/zenodo.5498378"
"Armand Collin",
"Julien Cohen-Adad"]
}