v3.2.0

Description

We have moved away from our plugin priority being determined by install time towards a default ordering. Additionally the reader parameter of BioImage now takes a sequence of readers as a priority list for tighter control. See specifics of our default ordering policy HERE.

What's Changed

• remove mac-os 13 by @BrianWhitneyAI in #166
• Admin: Repair changelog and curate docs landing. by @BrianWhitneyAI in #167
• feature/dummy-plugin-refactor by @BrianWhitneyAI in #168
• feature/plugin-priority by @BrianWhitneyAI in #162

Full Changelog: v3.1.0...v3.2.0

v3.1.0

Description

Version 3.1.0 adds in the BioImage.dimension_properties property which provides Per-dimension metadata describing semantic meaning and units.

What's Changed

• DOCS: fix links to reader installation by @ianhi in #146
• ci(dependabot): bump actions/checkout from 4 to 5 by @dependabot[bot] in #150
• ci(dependabot): bump actions/setup-python from 5 to 6 by @dependabot[bot] in #152
• Fix link reference in OVERVIEW.md by @sir-sigurd in #153
• Update writer registry for OMEZarrWriter release by @BrianWhitneyAI in #154
• admin/update-bioformats-ref by @BrianWhitneyAI in #156
• ci(dependabot): bump actions/checkout from 5 to 6 by @dependabot[bot] in #160
• add token by @BrianWhitneyAI in #157
• feature/dimension-properties by @BrianWhitneyAI in #158

New Contributors

• @ianhi made their first contribution in #146
• @sir-sigurd made their first contribution in #153

Full Changelog: v3.0.0...v3.1.0

v3.0.0

What's Changed

• update bioio-base class docs by @BrianWhitneyAI in #142
• feature/base-3.0.0 by @BrianWhitneyAI in #141

Full Changelog: v2.0.0...v3.0.0

v2.0.0

What's Changed

• Writer Documentation by @BrianWhitneyAI in #129
• feature/migrate-writers by @BrianWhitneyAI in #126
• bugfix/standard_metadata_typing by @BrianWhitneyAI in #135
• Feature/is supported reporting by @kmitcham in #132
• admin/doc-link by @BrianWhitneyAI in #138
• admin/bump-base-2.0.0 by @BrianWhitneyAI in #139

Full Changelog: v1.6.1...v2.0.0

v1.5.2

What's Changed

• admin/python-support-3.10+ by @BrianWhitneyAI in #113
• admin/docs-fix by @BrianWhitneyAI in #114
• bugfix/PPS-reset-Null by @BrianWhitneyAI in #117

Full Changelog: v1.5.1...v1.5.2

v1.5.1

What's Changed

• admin/pin-bioio-base by @BrianWhitneyAI in #111

Full Changelog: v1.5.0...v1.5.1

v1.4.0

What's Changed

• update typing for bioio-base changes by @BrianWhitneyAI in #100

Full Changelog: v1.3.0...v1.4.0

v1.3.0

This is an official release to accommodate the latest tifffile library. It does not support python 3.9

What's Changed

• Feature/96 update constant name by @kmitcham in #98

Full Changelog: v1.2.1...v1.3.0

v1.2.1

What's Changed

• restict ngff-zarr to prevent errors in Ubuntu 18 by @kmitcham in #89
• feature/parameterized-ome-tiff-writer-compression by @evamaxfield in #88
• allow zarr writer to do incremental writes of single timepoints by @toloudis in #91
• pin the tifffile version so we can release a final 3.9 build by @kmitcham in #99
• This will be the final version of bioio compatible with python 3.9

New Contributors

• @kmitcham made their first contribution in #89

Full Changelog: v1.2.0...v1.2.1

Official Release

What's Changed

• improve error string by @toloudis in #20
• use correct package name for bioio-base by @toloudis in #19
• Report plugin in repr by @SeanLeRoy in #21
• Allow '.' in plugin ext prefix by @SeanLeRoy in #23
• Auto retrieve plugins + adjust caching by @SeanLeRoy in #22
• Upgrade docs by @SeanLeRoy in #16

New Contributors

• @toloudis made their first contribution in #20

Full Changelog: v0.9.0...v1.0.0