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      UniRep-analysisUniRep-analysis PublicAnalysis and figure code from Alley et al. 2019. 
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      low-N-protein-engineeringlow-N-protein-engineering PublicCode and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning". 
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      Deep_diversification_AAVDeep_diversification_AAV PublicBioinformatics code for paper associated with deep diversification of AAV 
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      AAV_fitness_landscapeAAV_fitness_landscape PublicAnalysis for "Comprehensive fitness landscape of AAV capsid reveals a viral gene and enables machine-guided design" 
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-           Microglia Publicchurchlab/Microglia’s past year of commit activity 
-           Deep_diversification_AAV PublicBioinformatics code for paper associated with deep diversification of AAV churchlab/Deep_diversification_AAV’s past year of commit activity 
-           aav_rep_scan PublicContains code used to generate oligonucleotides for AAV2 rep scanning saturation mutagenesis library and to analyze resulting NGS data. Also includes code used to generate all figures in "Comprehensive mutagenesis maps the effect of all single codon mutations in the AAV2 rep gene on AAV production". churchlab/aav_rep_scan’s past year of commit activity 
-           etfl Public Forked from EPFL-LCSB/etflETFL: A formulation for flux balance models accounting for expression, thermodynamics, and resource allocation constraints churchlab/etfl’s past year of commit activity 
-           optmage PublicScripts for designing oligos and primers for MAGE (Multiplex Automated Genome Engineering) churchlab/optmage’s past year of commit activity 
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