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Attempt at consolidating our docker image update pipelines #260

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8261efd
first pass at a more generic bumper script for genegraph
sjahl Feb 11, 2022
32e8a8c
include the bumper in the docker image
sjahl Feb 11, 2022
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2 changes: 2 additions & 0 deletions dockerfiles/git-image-updater/Dockerfile
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Expand Up @@ -12,4 +12,6 @@ RUN apt-get update \
&& rm /tmp/gh-cli.tar.gz \
&& rm -rf /var/lib/apt/lists/*

COPY genegraph_bumper.sh /usr/local/bin/genegraph_bumper.sh

ENTRYPOINT ["/bin/bash"]
31 changes: 31 additions & 0 deletions dockerfiles/git-image-updater/genegraph_bumper.sh
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@@ -0,0 +1,31 @@
#!/usr/bin/env bash

# invocation: ./genegraph_bumper.sh genegraph abcdef1 "./helm/values/genegraph/values-stage.yaml,./helm/values/genegraph/values-prod.yaml"
set -euo pipefail

GENEGRAPH_DEPLOYMENT=$1
COMMIT_SHA=$2
UPDATE_FILES_LIST=$3
IFS="," read -ra UPDATE_FILES <<< "$UPDATE_FILES_LIST"
SHORT_SHA=${COMMIT_SHA:0:7}

# retrieve the architecture repo and check out a branch
git clone https://clingen-ci:[email protected]/clingen-data-model/architecture
cd architecture
git checkout -b image-update-$GENEGRAPH_DEPLOYMENT-$SHORT_SHA # TODO: this needs to be more specific

# generate a datestamp
date "+%Y-%m-%dT%H%M" > /tmp/DATETIME.txt

# for every file in UPDATE_FILES, update the image tag and data version
for filename in "${UPDATE_FILES[@]}"
do
/usr/bin/yq eval -i ".genegraph_docker_image_tag = \"$COMMIT_SHA\"" $filename
/usr/bin/yq eval -i ".genegraph_data_version = \"$(tr -d '\n' < /tmp/DATETIME.txt)\"" $filename
done

# commit the changes
git add -u
git -c user.name="Clingen CI Automation" -c user.email="[email protected]" commit -m "bumping docker image for ${GENEGRAPH_DEPLOYMENT}"
git push origin image-update-$GENEGRAPH_DEPLOYMENT-$SHORT_SHA
gh pr create --fill -l automation