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Down the rabbit hole we go
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Down the rabbit hole we go
44 followers · 29 following

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: Public SponsorAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pair Extraordinairex3Achievement: Pull Sharkx3Achievement: QuickdrawAchievement: Public SponsorAchievement: YOLOAchievement: StarstruckAchievement: Arctic Code Vault Contributor

Organizations

@spack @catg-umag

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dialvarezs/README.md

Hey! I'm Diego

I'm a bioinformatician / software developer specialized in building Nextflow pipelines and tools in Python, R, and Rust. Love automating stuff and creating nice visualizations and beautiful documents. Advocate for open science and reproducible research.

When I'm not exploring genomic data, I'm probably doing some web development with Litestar/FastAPI and Vue/Nuxt, or tinkering with Linux systems.

Active contributor of the nf-core community, particularly maintaining the nf-core/mag pipeline.

GitHub Stats Top Languages

Techologies and tools I use

Skills

Stuff I love

  • Nextflow - Makes creating bioinformatics pipelines quick and enjoyable.
  • Typst - Modern alternative to LaTeX, faster and with better ergonomics.
  • Litestar - My go-to framework for building Python APIs.
  • Polars - Fast and modern DataFrame library that makes working with data a breeze.

Pinned Loading

  1. neat-cv neat-cv Public

    A modern and elegant CV template for Typst, inspired by Awesome CV and simple-hipstercv.

    Typst 22 11

  2. readfaker readfaker Public

    A fast Oxford Nanopore read simulator with realistic quality profiles

    Rust

  3. nf-core/mag nf-core/mag Public

    Assembly and binning of metagenomes

    Nextflow 252 142

  4. catg-umag/ont-basecalling-demultiplexing catg-umag/ont-basecalling-demultiplexing Public

    Nextflow pipeline for basecalling / demultiplexing ONT data, using Dorado

    Nextflow 2 2

  5. litestar-nuxt-fullstack litestar-nuxt-fullstack Public

    An example fullstack project using Litestar + Nuxt

    Python

  6. containers containers Public

    My container collection for using them in bioinformatics pipelines

    Dockerfile