Pinned Loading

1. CVTree CVTree Public

   A whole-genome and alignment-free prokaryotic phylogeny tool

   C++ 23 5

2. Collapse Collapse Public

   a tool to annotate and evaluate the phylogenetic tree by lineage

   C++ 4

3. cvnet cvnet Public

   A project to obtain the sequence similarity network between genes and output the sparse matrix (Network) for Markov Clustering (MCL) to obtain the orthologues between genomes.

   C++

4. AlnSeqTree AlnSeqTree Public

   C++

5. NeighborJoint NeighborJoint Public

   Source codes for teaching

   C++ 1

6. EscalKNM EscalKNM Public

   Build Markov Transition Network based on Simulation Trajectories in Effective Energy Rescaling Spaces

   Jupyter Notebook