Documents and SOPs for the GRDI-AMR2 Project

This repo is for hosting or linking documentation for the GRDI-AMR2 Project.

Links to documentation

Science Network:

Connecting to the Science Network: For help connecting to the NMLB's Science Network, which is required to access IRIDA to store sequences, and the dashboards.

Metadata Standardization:

Several tools and SOPs are available to help standardize your sample, isolate, and sequence metadata as part of the project. Please contact Emil Jurga and Gabriel Wajnberg for questions and assistance.

Standard Operating Procedures:

• SOP for standardizing metadata: A webpage that outlines how to standardize sample, isolate, and sequence metadata.
• SOPs and documentation for the GRDI One Health Data Standard: A directory of PDFs that dives into more detail about the data standard, including detailed information on the fields and pick-lists.

Tools:

• The DataHarmonizer: The recommended tool for data standardization. A standalone webapp that provides a spreadsheet-like interface to fill out and validate data according to the GRDI-OH standard.
• The Excel Spreadsheet: An excel spreadsheet implementation of the standard.