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Greene Laboratory

Greene Laboratory at the University of Colorado Anschutz

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  1. scihub scihub Public

    Source code and data analyses for the Sci-Hub Coverage Study

    Jupyter Notebook 298 39

  2. BioBombe BioBombe Public

    BioBombe: Sequentially compressed gene expression features enhances biological signatures

    Jupyter Notebook 65 26

  3. lab-website-template lab-website-template Public template

    An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

    HTML 516 419

  4. covid19-review covid19-review Public

    A collaborative review of the emerging COVID-19 literature. Join the chat here:

    TeX 118 81

  5. deep-review deep-review Public

    A collaboratively written review paper on deep learning, genomics, and precision medicine

    HTML 1.3k 271

  6. tybalt tybalt Public

    Training and evaluating a variational autoencoder for pan-cancer gene expression data

    HTML 173 62

Repositories

Showing 10 of 176 repositories
  • scrumlord Public

    Continuous administration of the Greene Lab's electronic scrum

    greenelab/scrumlord’s past year of commit activity
    Python 13 BSD-3-Clause 9 2 0 Updated Dec 28, 2025
  • onboarding Public

    Onboarding materials for the Greene Lab

    greenelab/onboarding’s past year of commit activity
    31 CC0-1.0 24 1 0 Updated Dec 15, 2025
  • greenelab.com Public

    The website source code for greenelab.com

    greenelab/greenelab.com’s past year of commit activity
    HTML 3 BSD-3-Clause 26 1 0 Updated Dec 15, 2025
  • multi-dwpc Public

    This repository contains scripts testing aggregate degree weighted path count (DWPC) statistics.

    greenelab/multi-dwpc’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Dec 10, 2025
  • deconvolution_sc_sn_comparison Public

    The following repository is a work in progress. The Aim is to deconvolve samples with SC and SN, comparing performance.

    greenelab/deconvolution_sc_sn_comparison’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Dec 3, 2025
  • HGSOC_Adipocytes Public

    Deconvolution of bulk RNA-seq samples of HGSOC including adipocytes.

    greenelab/HGSOC_Adipocytes’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 1 0 0 Updated Dec 1, 2025
  • repository_analysis Public

    Analysis of GitHub repository and project content.

    greenelab/repository_analysis’s past year of commit activity
    Python 0 BSD-3-Clause 1 0 1 Updated Nov 20, 2025
  • lab-website-template Public template

    An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

    greenelab/lab-website-template’s past year of commit activity
    HTML 516 BSD-3-Clause 419 7 0 Updated Nov 17, 2025
  • lwt-poster Public

    Poster on Lab Website Template

    greenelab/lwt-poster’s past year of commit activity
    TypeScript 1 0 0 0 Updated Sep 30, 2025
  • Context-Aware-Path-Probability Public

    Algorithm development for context aware path search through biomedical knowledge graphs.

    greenelab/Context-Aware-Path-Probability’s past year of commit activity
    Jupyter Notebook 0 BSD-3-Clause 2 0 0 Updated Sep 25, 2025
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