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Option to add path to previous pling output, which clustered a subset of the current plasmids. Previous results must have used the same thresholds as the current run. This computes the missing distances, appends the nodes to the pling network, and clusters on the network using the previous typing as initial labels for the clustering (i.e. modifies networkx's asynchronous label propagation implementation). The result is not a typing of the newly added plasmids to the previous clustering, but rather a new clustering that is biased towards being the same as the previous clustering on the shared plasmids. Includes in its output tsv's which state the previous and current typing, and distances between clusterings on the shared plasmids.

Remains to implement:

  • distances between clustering
  • all pairwise containment distances

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