Update iRODS documentation to align with irods4j refactor

[korydraughn]

• Depends on Update support for iRODS cyberduck#17341

[korydraughn]

Will squash to one commit once approved.

[korydraughn]

Given the questions on the profile PR, I'm starting to think we need to add a note about the profile requiring the user to update it before use.

Thoughts?

[dkocher]

Given the questions on the profile PR, I'm starting to think we need to add a note about the profile requiring the user to update it before use.

Thoughts?

It should definitely be documented which properties are required to be customized and we will not be able to publish a profile requiring customization through Preferences → Profiles.

[korydraughn]

If requiring customization of the profile is a blocker, that suggests the user has to write the profile themselves - i.e. the documentation needs to list the required properties and also provide a skeleton profile for readers to copy.

Is that correct? Is there an alternative?