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Deduplicate values.yaml referenceGenomes and prepro segments structure

configConfiguration related issues, i.e. helm processingConfiguration related issues, i.e. helm processing

deploymentCode changes targetting the deployment infrastructureCode changes targetting the deployment infrastructure

discussionOpen questionsOpen questions

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5911 In loculus-project/loculus;

· anna-parker opened on Jan 31, 2026

Integration tests should have/use more utility functions for setting up data

e2eE2E test relatedE2E test related

refactoringCode requires refactoringCode requires refactoring

testsTest related issuesTest related issues

Status: Open.

#5909 In loculus-project/loculus;

· theosanderson opened on Jan 30, 2026

Ingest: add gca accession downloads to the ingest pipeline

ingestIngest pipelineIngest pipeline

multipath

Status: Open.

#5905 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

Multi-path: add reference presets

multipath

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5904 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

prepro nextclade: allow support for parsing <code>labeledSubstitutions</code> from nextclade output

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5903 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

prepro nextclade: add function to extract/parse string of reference name

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5902 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

prepro nextclade: add support for parsing results with <code>phenotypeValues</code>

multipath

preprocessingIssues related to the preprocessing componentIssues related to the preprocessing component

Status: Open.

#5901 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

Inconsistent capitalization on search item selector

bugSomething isn't workingSomething isn't working

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5900 In loculus-project/loculus;

· anna-parker opened on Jan 30, 2026

Avoid typecast in referenceSelector

codesmellFor warnings/lints without immediate harm but to be fixed eventuallyFor warnings/lints without immediate harm but to be fixed eventually

multipath

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5891 In loculus-project/loculus;

· anna-parker opened on Jan 28, 2026

multi segment, multi reference: Add config validation for uniqueness of the segment, reference and gene names within an organism

configConfiguration related issues, i.e. helm processingConfiguration related issues, i.e. helm processing

deploymentCode changes targetting the deployment infrastructureCode changes targetting the deployment infrastructure

multipath

Status: Open.

#5890 In loculus-project/loculus;

· anna-parker opened on Jan 28, 2026

Ingest image override cannot be specified with tag

bugSomething isn't workingSomething isn't working

configConfiguration related issues, i.e. helm processingConfiguration related issues, i.e. helm processing

ingestIngest pipelineIngest pipeline

Status: Open.

#5882 In loculus-project/loculus;

· fhennig opened on Jan 26, 2026

Copy button and download button on sequences at bottom of details page

featureFeature proposalFeature proposal

websiteTasks related to the web applicationTasks related to the web application

Status: Open.

#5879 In loculus-project/loculus;

· theosanderson opened on Jan 26, 2026