GitHub - ndaniels/MRFy: Structural Motifs Using Random Fields, stochastic search implementation in Haskell

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Structural Motifs Using Random Fields, stochastic search implementation in Haskell

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Name		Name	Last commit message	Last commit date
Latest commit History 444 Commits
Control/Monad		Control/Monad
SearchStrategies		SearchStrategies
data		data
otherdocs		otherdocs
scripts		scripts
testing		testing
.gitignore		.gitignore
BENCH		BENCH
Beta.hs		Beta.hs
BetaProps.hs		BetaProps.hs
CommandArgs.hs		CommandArgs.hs
Constants.hs		Constants.hs
ConstantsGen.hs		ConstantsGen.hs
DEPENDENCIES		DEPENDENCIES
DevNotes.txt		DevNotes.txt
Fasta.hs		Fasta.hs
FileOps.hs		FileOps.hs
HMMArby.hs		HMMArby.hs
HMMPlus.hs		HMMPlus.hs
HMMProps.hs		HMMProps.hs
HyperTriangles.hs		HyperTriangles.hs
LazySearchModel.hs		LazySearchModel.hs
MRFTypes.hs		MRFTypes.hs
Main.hs		Main.hs
NonUniform.hs		NonUniform.hs
ParRandom.hs		ParRandom.hs
ParsecHelper.hs		ParsecHelper.hs
Perturb.hs		Perturb.hs
PrefixMemo.hs		PrefixMemo.hs
PsiPred.hs		PsiPred.hs
README		README
RunPsiPred.hs		RunPsiPred.hs
Score.hs		Score.hs
SearchStrategy.hs		SearchStrategy.hs
Setup.hs		Setup.hs
ShowAlignment.hs		ShowAlignment.hs
Shuffle.hs		Shuffle.hs
StochasticSearch.hs		StochasticSearch.hs
TODO		TODO
V2.hs		V2.hs
Viterbi.hs		Viterbi.hs
Wrappers.hs		Wrappers.hs
ghc-opts		ghc-opts
mkfile		mkfile
mrfy.cabal		mrfy.cabal
notes.txt		notes.txt
session.vim		session.vim
sources.txt		sources.txt
test.hmm+		test.hmm+
test.ss2		test.ss2

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This is a Haskell implementation of the SMURF2 algorithm (stochastic search-based).

Docs for cmdargs (which is very nice):
  http://hackage.haskell.org/packages/archive/cmdargs/latest/doc/html/System-Console-CmdArgs-Implicit.html