Netherlands Institute of Ecology (NIOO-KNAW)
- 6 followers
- Wageningen, Netherlands
- https://www.nioo.knaw.nl
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epiGBS-pipeline
epiGBS-pipeline Publicmodified clone from https://github.com/thomasvangurp/epiGBS. Added wrapper scripts and conda compatibility
Python
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Repositories
- orochi Public
nioo-knaw/orochi’s past year of commit activity - hydra Public archive
Pipeline for amplicon sequencing projects. OTUs can be build with various methods (usearch,vsearch,uparse,swarm) and classified using the RDP Classifier and SINA. Final output is a BIOM file for downstream processing (Phyloseq/R)
nioo-knaw/hydra’s past year of commit activity - PhyloFunDB Public
nioo-knaw/PhyloFunDB’s past year of commit activity - BSAnalyser Public
BSAnalyser is a pipeline designed to benchmark multiple BS aligners and SNP callers from raw BS sequencing data input. It will align sequences using the chosen aligners and call SNPs using the chosen SNP calling tools for each aligner used.
nioo-knaw/BSAnalyser’s past year of commit activity - HFC-permutation Public Forked from FleurGaBru/HFC-permutation
pipeline for HFC calculations from ped and map file, including permutations
nioo-knaw/HFC-permutation’s past year of commit activity - QC-NGS Public
This tutorial will guide you through the process of generating and reading a QC report.
nioo-knaw/QC-NGS’s past year of commit activity - cloud-genomics Public
nioo-knaw/cloud-genomics’s past year of commit activity - wrangling-genomics Public
nioo-knaw/wrangling-genomics’s past year of commit activity
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