NeuroWorkflow

A Python library for building and executing neural simulation workflows.

Features

• Node-based workflow system for neural simulations
• Type-safe connections between workflow components
• Pre-built nodes for common neural simulation tasks
• Extensible architecture for custom nodes
• Parameter optimization support for tuning simulation parameters

Current status

• The src folder contains the core functionality and sample nodes
• In the examples folder:
  • sonata_simulation.py - Basic simulation example
  • neuron_optimization.py - Example of parameter optimization (not yet completed, but running with some bugs)
  • epilepsy_rs.py - Example of epileptic resting state using the virtual brain TVB
• In the notebooks folder:
  • 01_Basic_Simulation.ipynb - Interactive example of basic simulation
  • epilepsy_rs.ipynb - Interactive example of epileptic resting state using the virtual brain TVB
  • SNNbuilder_example1.ipynb - Interactive example of Spiking Neural Network building using SNNbuilder custom nodes

License

This project is licensed under the MIT License - see the LICENSE file for details.