Bio IO Devs

All

17 repositories

bioio-ome-zarr
Public
A BioIO reader plugin for reading Zarr files in the OME format.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•4•8•8•1•Updated Jan 3, 2026Jan 3, 2026
bioio-czi
Public
A BioIO reader plugin for reading CZI files.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
GNU General Public License v3.0
•3•5•5•1•Updated Jan 2, 2026Jan 2, 2026
bioio-ome-tiff
Public
A BioIO reader plugin for reading Tiff files in the OME format.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•2•4•2•0•Updated Jan 2, 2026Jan 2, 2026
bioio-ome-tiled-tiff
Public
A BioIO reader plugin for reading tiled tiff files in the OME format.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•0•1•1•0•Updated Jan 2, 2026Jan 2, 2026
bioio-lif
Public
A BioIO reader plugin for reading LIF (Leica Image File) images.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
GNU General Public License v3.0
•1•1•3•0•Updated Jan 2, 2026Jan 2, 2026
bioio-tifffile
Public
A BioIO reader plugin for reading TIFFs using Tifffile
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•5•2•2•0•Updated Jan 2, 2026Jan 2, 2026
bioio-nd2
Public
A BioIO reader plugin for reading ND2 images.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•1•0•0•0•Updated Jan 2, 2026Jan 2, 2026
bioio-imageio
Public
A BioIO reader plugin for reading simple image and movie formats
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•1•1•0•0•Updated Jan 2, 2026Jan 2, 2026
bioio-sldy
Public
A BioIO reader plugin for reading 3i slidebook (SLDY) images
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•1•0•1•1•Updated Jan 2, 2026Jan 2, 2026
bioio-dv
Public
A BioIO reader plugin for reading Digital Video (DV) files.
python scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Jan 2, 2026Jan 2, 2026
bioio-bioformats
Public
A BioIO reader plugin for reading bioformats formatted images.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
GNU General Public License v3.0
•4•2•1•0•Updated Jan 2, 2026Jan 2, 2026
bioio
Public
Image reading, metadata management, and image writing for Microscopy images in Python
python xarray scientific-computing dask image-metadata microscopy scientific-formats aicsimageio
Python
•
BSD 3-Clause "New" or "Revised" License
•11•110•6•0•Updated Dec 22, 2025Dec 22, 2025
bioio-base
Public
Typing, base classes, and more for BioIO projects.
python xarray scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•2•0•Updated Dec 8, 2025Dec 8, 2025
bioio-conversion
Public
A BioIO conversion tool for going between image formats
Python
•
BSD 3-Clause "New" or "Revised" License
•1•5•2•0•Updated Dec 3, 2025Dec 3, 2025
bioio-tiff-glob
Public
A BioIO reader plugin for reading Tiff Glob images.
python scientific-computing dask image-metadata microscopy scientific-formats bioio
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Dec 1, 2025Dec 1, 2025
cookiecutter-bioio-reader
Public
A cookiecutter template for creating a new BioIO file format reader plugin.
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•0•Updated Dec 1, 2025Dec 1, 2025
.github
Public
0•0•0•0•Updated Nov 20, 2023Nov 20, 2023