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    35 repositories

    • Research-Information-System

      Public
      How to setup a research information system with PACS and RIS components
      Go
      •
      GNU General Public License v3.0
      •1•9•13•6•Updated Dec 21, 2025Dec 21, 2025

    • FionaDocs

      Public
      FIONA (Flash-based Input/Output Network Appliance) - A secure research data gateway for medical imaging. Provides DICOM anonymization, quarantine management, and automated transfer from clinical to research PACS systems while ensuring GDPR compliance.
      Python
      •0•1•0•0•Updated Dec 15, 2025Dec 15, 2025

    • MMIVActivities

      Public
      Activities of the MMIV center
      TeX
      •9•4•2•1•Updated Dec 10, 2025Dec 10, 2025

    • pr2mask

      Public
      Presentation state objects to .nii
      C++
      •
      GNU General Public License v3.0
      •0•0•5•0•Updated Nov 6, 2025Nov 6, 2025

    • wsi2fiona

      Public
      Automation for importing whole-slide-images into research PACS
      Python
      •0•2•1•0•Updated Nov 5, 2025Nov 5, 2025

    • pyFiona

      Public
      Upload local dicom data to Fiona using python
      Python
      •0•0•0•0•Updated Sep 23, 2025Sep 23, 2025

    • check4mmps

      Public
      Verify DICOM files for a possible use in GEMRIC
      CSS
      •0•0•1•0•Updated Sep 16, 2025Sep 16, 2025

    • check4pt

      Public
      Check zip files with DICOM image for suitability for post-processing
      CSS
      •
      Apache License 2.0
      •0•0•1•0•Updated May 27, 2025May 27, 2025

    • programmer_task

      Public
      A programming task
      JavaScript
      •0•0•0•0•Updated Apr 26, 2025Apr 26, 2025

    • ECTinfo

      Public
      0•0•0•0•Updated May 21, 2024May 21, 2024

    • DICOMAnonymizer

      Public
      A multi-threaded anonymizer for DICOM files implementing most of DICOM PS 3.15 AnnexE
      C++
      •
      The Unlicense
      •0•15•7•0•Updated Mar 22, 2024Mar 22, 2024

    • pseudonymize_whole_slide_images

      Public
      Converts a whole slice image into a DICOM structure and rewrites the barcode
      Dockerfile
      •0•0•0•0•Updated Jan 4, 2023Jan 4, 2023

    • SpatialNavigationScoring

      Public
      Simple scoring website for analyzing log files from a spatial navigation task
      JavaScript
      •0•0•0•0•Updated Nov 4, 2022Nov 4, 2022

    • human-mouse-hybrids

      Public
      Visualizing proteomics data
      JavaScript
      •0•0•0•0•Updated Sep 24, 2022Sep 24, 2022

    • visual-studio-code-select

      Public
      TypeScript
      •
      MIT License
      •0•0•0•0•Updated Jul 30, 2022Jul 30, 2022

    • fake-cells

      Public
      Cell separation demo using de-novo data
      Jupyter Notebook
      •0•0•0•0•Updated Mar 16, 2022Mar 16, 2022

    • RegisterMRIDataForDeepLearning

      Public
      FSL registration of examples volumes for deep learning
      Shell
      •0•0•0•0•Updated Feb 25, 2022Feb 25, 2022

    • ROR-MRIQC

      Public
      Integration of MRIQC into the research information system Helse Vest
      0•0•0•0•Updated Feb 17, 2022Feb 17, 2022

    • DICOM-workflows

      Public
      A project to collection information on how to work with DICOM data in Matlab and python
      0•2•0•0•Updated Feb 12, 2022Feb 12, 2022

    • LungSegmentation

      Public
      Basic lung segmentation from chest CT
      C++
      •2•7•0•0•Updated Feb 10, 2022Feb 10, 2022

    • paintobrain

      Public
      Paint A Brain Project
      JavaScript
      •0•0•3•0•Updated Dec 9, 2021Dec 9, 2021

    • CopyPETHeader

      Public
      A short DICOM toy example
      Shell
      •0•0•0•0•Updated Dec 8, 2021Dec 8, 2021

    • BiolabSampleProject

      Public
      JavaScript
      •0•0•0•0•Updated Jul 12, 2021Jul 12, 2021

    • RewritePixel

      Public
      Anonymize DICOM image data by detecting text and replacing it with black squares
      C++
      •1•4•0•0•Updated May 24, 2021May 24, 2021

    • filter_dicom_by_tag

      Public
      Read DICOM files from local directory and filter them based on AI applied to the DICOM tags
      C++
      •1•2•2•0•Updated Jan 22, 2021Jan 22, 2021

    • hallway-kiosk

      Public
      Basic setup for the hallway kiosk that accepts image files from slack channel
      Python
      •0•0•1•0•Updated Nov 2, 2020Nov 2, 2020

    • gen-id

      Public
      Generate identifiers for research projects following regular expression pattern
      Python
      •0•0•0•0•Updated Sep 18, 2020Sep 18, 2020

    • spectramosaic-public

      Public
      Visualization tool for interactive exploration of magnetic resonance spectroscopy ratios
      JavaScript
      •1•0•0•0•Updated Jun 29, 2020Jun 29, 2020

    • LesionProject

      Public
      Source code for the brain lesion detection project
      C++
      •0•1•0•0•Updated May 14, 2020May 14, 2020

    • deboning

      Public
      Remove bone tissue from plane-film X-Ray images trained with digitally reconstructed radiographs
      Python
      •1•3•0•0•Updated Apr 1, 2020Apr 1, 2020