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Test Files for taxonomic classification #344

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heracle wants to merge 6 commits into from
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Test Files for taxonomic classification #344

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c1acb77
add some small methods that will be further used for tax class
heracle Jul 28, 2021
3b07820
address comments
heracle Jul 28, 2021
7a2dfaf
add some small methods that will be further used for tax class
heracle Jul 28, 2021
2cb6d99
add data files used for taxonomic integration and unit tests
heracle Jul 28, 2021
3678aa4
rebase
heracle Jul 28, 2021
0fd1512
delete tax test files
heracle Aug 3, 2021
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7 changes: 6 additions & 1 deletion metagraph/src/common/serialization.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -326,6 +326,9 @@ void serialize_number_number_map(std::ostream &out,
template
void serialize_number_number_map(std::ostream &out,
const std::unordered_map<uint32_t, uint32_t> &map);
template
void serialize_number_number_map(std::ostream &out,
const tsl::hopscotch_map<uint64_t, uint64_t> &map);

template <class Map>
bool load_number_number_map(std::istream &in, Map *map) {
Expand Down Expand Up @@ -374,7 +377,9 @@ bool load_number_number_map(std::istream &in,
template
bool load_number_number_map(std::istream &in,
std::unordered_map<uint32_t, uint32_t> *map);

template
bool load_number_number_map(std::istream &in,
tsl::hopscotch_map<uint64_t, uint64_t> *map);

template <class Map>
void serialize_string_number_map(std::ostream &out, const Map &map) {
Expand Down
7 changes: 7 additions & 0 deletions metagraph/src/common/utils/string_utils.cpp
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Expand Up @@ -7,6 +7,13 @@

namespace utils {

bool starts_with(const std::string &str, const std::string &prefix) {
if (prefix.size() > str.size()) {
return false;
}
return prefix == std::string_view(str).substr(0, prefix.size());
}

bool ends_with(const std::string &str, const std::string &suffix) {
auto actual_suffix = str.substr(
std::max(0, static_cast<int>(str.size())
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2 changes: 2 additions & 0 deletions metagraph/src/common/utils/string_utils.hpp
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Expand Up @@ -8,6 +8,8 @@

namespace utils {

bool starts_with(const std::string &str, const std::string &prefix);

bool ends_with(const std::string &str, const std::string &suffix);

std::string remove_suffix(const std::string &str, const std::string &suffix);
Expand Down