Atomistic file extension#16

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MSallermann wants to merge 26 commits intospirit-code:masterfrom

MSallermann:atomistic_v2

Commits on Aug 18, 2021

Refactor: Moved validation of segment header keywords
Moritz
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Moved parser_state into its own header
Moritz
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Added keywords header file
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Use pegtl keywords rules to parse segment headers.
Moritz
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Implemented atomistic keywords
Moritz
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Improved exceptions in atomistic keywords
Moritz
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Implemented parsing of atomsitic keywords
Moritz
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Adjusted ctypes structs to atomistic properties
Moritz
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Added unit test for atomistic ovf and made it work
Moritz
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Added check for missing and wrong keywords for meshtype 'lattice'
Moritz
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Use segment.n_cells member instead of creating new anodes, bnodes and cnodes members
Moritz
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Minor changes in parser_state
Moritz
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Implemented compatibility format in write.
Moritz
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Improved implementation of `basis_value` keyword
Moritz
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Adjusted keyword `basis` for aovf_comp format
Moritz
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Completed parsing/writing of AOVF_COMP format files
Moritz
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Commits on Aug 19, 2021

Testing: Moved atomistic tests to own file and extended them
Moritz
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Small fix for atomistic keywords meshtype value
Moritz
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Added extension_format defines in ovf.py
Moritz
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Added simple test for atomistic case to python API
Moritz
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Commits on Aug 27, 2021

Unit test: Added a test that tries to read in weirdly formatted but valid ovf and avof files.
Moritz
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Commits on Aug 31, 2021

Commits on Sep 5, 2021

Moved pegtl parsing of Vector3 into a utility function
Moritz
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Renamed found_meshtype_atomistic to found_meshtype_lattice
Moritz
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Removed const_cast<char*>("literal").
Moritz
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