Cloud-native genomic dataframes and batch computing

A comprehensive tutorial about GWAS and PRS

GWAS Tutorial for Beginners

An open-source toolkit for large-scale genomic analysis

Scalable genetics toolkit

Access share reviewed code & Jupyter Notebooks for use on the UK Biobank (UKBB) Research Application Platform. Includes resources from DNAnexus webinars, online trainings and workshops.

Pan-genome wide association studies

A software package for calculating, applying, evaluating and plotting the results of polygenic risk scores

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

Codebook from my GWAS cookbook

LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

An R package for creating Q-Q and manhattan plots from GWAS results

Single-cell disease relevance score (scDRS)

A Javascript/d3 embeddable plugin for interactively visualizing statistical genetic data from customizable sources.

machine learning for genomic variants

Rare variant test software for next generation sequencing data

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

SEER, reimplemented in python 🐍🔮

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.