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Update Python support to 3.10-3.14 and add CI workflow #113

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Merged
stevenweaver merged 6 commits into from
Oct 8, 2025
Merged

Update Python support to 3.10-3.14 and add CI workflow #113

stevenweaver merged 6 commits into from
Oct 8, 2025

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@stevenweaver stevenweaver commented Oct 8, 2025

Summary

  • Added python_requires='>=3.10' to setup.py to enforce minimum Python version
  • Created GitHub Actions CI workflow that tests against Python 3.10, 3.11, 3.12, 3.13, and 3.14
  • CI runs on both Ubuntu and macOS platforms
  • Removed support for Python versions below 3.10

Changes

  • setup.py: Added python_requires='>=3.10' parameter
  • .github/workflows/ci.yml: New CI workflow testing across multiple Python versions and platforms

Test plan

  • Verify python_requires prevents installation on Python <3.10
  • Review code for Python <3.10 incompatibilities (none found)
  • CI workflow will automatically test on push/PR
  • Verify all CLI tools work (hivtrace, hivtrace_strip_drams, hivtrace_viz)
  • Verify test suite passes on all Python versions

🤖 Generated with Claude Code

stevenweaver and others added 6 commits October 8, 2025 14:24
@stevenweaver @claude
Update Python support to 3.10-3.14 and add CI workflow
fdadcf9 
- Add python_requires='>=3.10' to setup.py to enforce minimum version
- Create GitHub Actions CI workflow testing Python 3.10-3.14
- Test on both Ubuntu and macOS platforms
- Run full test suite and verify CLI tools work correctly

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude <[email protected]>
@stevenweaver
Retrigger CI
2ea692a
@stevenweaver
Add system dependencies for hyphy-python compilation
fbdf2b1
@stevenweaver
Replace nose with pytest for Python 3.12+ compatibility
4091ca7
@stevenweaver
Skip tests requiring tn93 when binary is not available
7752eb3
@stevenweaver
Remove macOS from CI, test only on Ubuntu
731ab59
@stevenweaver
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stevenweaver commented Oct 8, 2025

3.14 isn't working yet due to pysam dependency.

@stevenweaver stevenweaver merged commit 43c695c into master Oct 8, 2025
4 of 5 checks passed
@stevenweaver stevenweaver deleted the update-python-support-3.10-3.14 branch October 8, 2025 22:18
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@stevenweaver